Haloferax volcanii DS2: HVO_2712
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Entry
HVO_2712 CDS
T01200
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hvo
Haloferax volcanii DS2
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hvo03016
]
HVO_2712 (rtcB)
Enzymes [BR:
hvo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HVO_2712 (rtcB)
Transfer RNA biogenesis [BR:
hvo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HVO_2712 (rtcB)
Prokaryotic type
tRNA splicing ligases
HVO_2712 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADE03506
UniProt:
D4GW23
LinkDB
All DBs
Position
2557868..2559328
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AA seq
486 aa
AA seq
DB search
METREFGDIELRRVREHVWEIPREGEMNAPARVLASEALLDHIGDDKTLEQLRNATHLPG
ITKHAICMPDGHQGYGFPVGGVGATDTADGCLSPGAVGYDINCGVRMMTTNLTYEDLQGH
EEELVDALFEAVPSGLGGGGVVKGDAETIEDILARGMRWAVDAGYATDDDLAHCEDEGFR
DDARPEFVSQKAKDRGRNQIGSLGSGNHFLEVQRVTDVYRDDVAESFGLEADQIVVLIHC
GSRGLGHQTCTDYLRRIEQEHADLLDDLPDKELAAAPAGSELAEEYYGAMCAAINFAWVN
RQLIMHRTREVFADVFDRDWRDMEMRLLYDVAHNIAKKEVHMVDGEERELYVHRKGATRA
FPAGRPELPPAYADVGQPVIIPGSMGAGSYVLRGGDQSLDLTFGSTAHGAGRLMSRTKAK
QEYWGETVQDELREQEKIYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDKVARTFP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggaaacgcgcgagttcggcgacatcgaactgcgacgggttcgcgagcacgtctgggag
attccgcgggagggcgagatgaacgcccccgcgcgggtgctggcctccgaggcgctgctc
gaccacatcggcgacgacaagacgctcgaacagctgcggaacgcgacgcacctgccaggt
atcaccaaacacgccatctgcatgcccgacggccaccagggctacgggttcccggtcggc
ggcgtcggcgcgaccgacaccgcggacggctgtctctcccccggcgcggtcggctacgac
atcaactgcggcgtccggatgatgacgacgaacctcacctacgaggaccttcagggccac
gaggaggaactcgtcgacgccctgttcgaggccgtcccctcgggactcggcggcggcggc
gtcgtcaagggcgacgccgagaccatcgaggacatcctcgcccgcgggatgcgctgggcg
gtcgacgccggttacgccacggacgacgacctcgcccactgcgaggacgaaggcttccgc
gacgacgcccgtcccgagttcgtctcccagaaggcgaaagaccgcggccgcaaccaaatc
ggcagtctcggctccggaaaccacttcctcgaagtccagcgcgtcacggacgtctaccgc
gacgacgtggccgagtcgttcggcctcgaagcggaccaaatcgtcgtcctcatccactgt
ggctcccgcggactcggccaccagacctgcaccgactacctccggcgcatcgagcaagaa
cacgccgacctgctcgacgacctgccggacaaggagctcgcggccgcgcccgccggctcc
gaactcgcagaggagtactacggcgcgatgtgcgccgccatcaacttcgcctgggtgaac
cgacagctcatcatgcaccgcacgcgcgaggtgttcgcggacgtgttcgaccgcgactgg
cgcgacatggagatgcgcctgttgtacgacgtggcgcacaacatcgccaagaaggaggtc
cacatggtagacggcgaagagcgcgaactctacgtccaccggaagggcgcgacgcgggcg
ttccccgcgggccggcccgaactcccgcccgcctacgccgacgtgggccagccggtcatc
atccccgggagcatgggcgcggggagctacgtcctccgcggcggcgaccagtcgctcgac
ctcaccttcggctcgaccgcccacggcgcgggccggctcatgagccgaacgaaggcgaaa
caggagtactggggcgagacggtgcaggacgagctccgcgagcaggagaagatatacgtg
aaagcccagtcgggcgcgacggtcgcagaagaagcgccgggcgtctacaaggacgtcgac
gaggtcgtccgcgtctccgacgagttgggcatcggcgacaaggtcgcgcggacgttcccc
gtctgcaacatcaagggctga
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