Haloferax volcanii DS2: HVO_2724
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Entry
HVO_2724 CDS
T01200
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hvo
Haloferax volcanii DS2
Pathway
hvo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hvo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HVO_2724 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvo03019
]
HVO_2724 (rnj)
Messenger RNA biogenesis [BR:
hvo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HVO_2724 (rnj)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
ADE02903
UniProt:
D4GW49
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All DBs
Position
2568561..2569913
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDVVVFDMGLNLSQVLIHDNVETEKMHSLDLIDMGA
IPDDRVMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYDAPVVATPFTIELVKQQIEGENK
FNVNNDLVKMEAGETMSIGDSGNVELEFVHVTHSIIDAINPVVHTPEGAVVYGLDKRMDH
SPVLEDPIDMKRFREIGREGNGVLAYIEDCTNAGRKGRTPSESVARRHLKDVMTSVEDYD
GGIVATTFSSHISRVSSLVEFAKDIGRQPVLLGRSMEKYSGTAERLGFVDLPDDLGMYGH
RKSVDRTFKRIMKEGKENYLPIVTGHQGEPRAMLTRMGRGETPYEIDDGDKVIFSARVIP
EPTNEGQRYQSERLLRMQGARIYDEIHVSGHLREEGHYEMLQALQPQHVIPAHQNLKGFA
PYVDLAESQGYALGRDLHVTRNGNMIQLVE
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaaccataggcggatacgaagaagtcggccgtcagatgacggct
gtccgtgccggagacgacgtcgtcgtcttcgacatgggtctcaacctgtcgcaggtcctc
atccacgacaacgtcgagaccgaaaagatgcacagcctcgacctcatcgacatgggcgct
atcccggacgaccgggtcatgagcgacctcgaaggagacgtgcaggccatcgtccccacg
cacggccacctcgaccacatcggtgccatctccaagctcgcccaccgctacgacgccccc
gtcgtggcgacgcccttcaccatcgaactggtgaaacagcagatcgaaggcgagaacaag
ttcaacgtcaacaacgacctcgtcaagatggaagccggcgagacgatgtccatcggcgac
tccggcaacgtggaactcgaattcgtccacgtcacccactccatcatcgacgccatcaac
ccggtcgtccacacgcccgagggcgctgtcgtctacggtctcgacaagcgcatggaccac
tcgccggtcctcgaagaccccatcgacatgaagcgcttccgcgaaatcggtcgcgagggc
aacggcgtgctcgcgtacatcgaagactgtacgaacgccggccggaagggccgcacgccc
tccgagtccgtcgcgcgccgccacctcaaagacgtgatgacctccgtcgaggactacgac
ggcggcatcgtcgcgacgacgttctcgtcgcacatctcccgggtctcctcgctcgtcgag
ttcgccaaggacatcggccgccagccggtcctcctcggccgctcgatggagaagtactcc
ggcacggccgagcgcctcggcttcgtcgacctccccgacgacctcgggatgtacggccac
cgcaagtccgtcgaccgcaccttcaagcgaatcatgaaggagggcaaggagaactacctg
cccatcgtcacgggccaccagggcgagccgcgcgcgatgctcacccgcatgggccgcggc
gagacgccgtacgagattgacgacggcgacaaggtcatcttctcggcgcgggtcatcccg
gagccgacgaacgagggccagcgctaccagtccgaacgcctcctgcgcatgcagggcgcg
cgcatctacgacgagattcacgtctccggccacctccgagaggagggccactacgagatg
ctccaggcgctccagccccagcacgtcatcccggctcaccagaacctgaaaggcttcgct
ccgtacgtggacctcgcggagagtcagggctacgccctcggtcgcgacctccacgtcacg
cggaacggcaacatgattcagctggtggagtga
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