Candidatus Hepatoplasma vulgare: HPAVJP_1030
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Entry
HPAVJP_1030 CDS
T09842
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hvu
Candidatus Hepatoplasma vulgare
Pathway
hvu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hvu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HPAVJP_1030 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hvu03021
]
HPAVJP_1030 (rpoC)
03400 DNA repair and recombination proteins [BR:
hvu03400
]
HPAVJP_1030 (rpoC)
Enzymes [BR:
hvu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HPAVJP_1030 (rpoC)
Transcription machinery [BR:
hvu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HPAVJP_1030 (rpoC)
DNA repair and recombination proteins [BR:
hvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HPAVJP_1030 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Phage_FRD3
DsbA_N
Peptidase_M23
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BDV02214
LinkDB
All DBs
Position
107798..111748
Genome browser
AA seq
1316 aa
AA seq
DB search
MEKQDVDNTKNISSSDIFKIKKVRIRIALNEDIEEWSSGEVTKPETINYKTHKPEKDGLF
DEKIFGPTKDFKCPVCGKKHKRSDLGKVCSNCGEAIIESKMVRRRKMGYIKLAVPIAHIW
FTRIDYSIIRSVLGLKQDDLESILYFNAHIIYDNGGHSEIKERDMIYIQNAPSIYRKIFT
LLLNIEKDEKRKKEIEEKLITLVEESKADIGQSYGIDFYDYNDFISKYSDIKIGTGAETV
KKLLEKLDLKKEQQAVALEIKKNPKKTSNFRRNKVLESFIKSGQNPSIMILEYIPVIPAD
LRPLIQLDGGRHSTVDINELYRRIIIRNNRLKQWKLIGAPNLIIQNEKRMLQESVDALFD
NTRKKNPINSKDNRPLKSLAENLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQVGL
PKQMVVKLFEPFIVNYLVKEGVTKNIKQAKKMIEIFDEKIWKYAGRVIKSHPVLLNRAPT
LHRLSIQAFEPVITSGKAIRLHPLVTPSFNADFDGDQMAVHVPLSAKAKKEAMELMLSTK
NILGPKDGKLILSPSQDIVLGIYYLTKSYSNSLGSNHYYSSATDIYNLLVLDKLNIHSHI
ILPLKEFADKFKEEIEEGYKYLFTTVGRILFNGVLPKDFVYINDIEDFETSKINKKYLIK
SAGNFNKKFEEFNYSFKPFNKEKLTRVIEGVFDQKREEIVDVLDAIKNLGFNYSMLSGVS
MSINDIIDIKDKDQVFKDADEKVKNLQDNTDEGLITDDQRYMSVLKVWSEAKDKIEKKLN
DELRDLPDNSLFMMMDSGARGSISNFVQLAGMRGSMSKAAHEYAALRRQGIIVRSTEEIP
IRSSFKVGLTPFEYFLSTHGARKGLSDTATKTAESGYLTRRLVDAVQDVTIIEEDCKTNQ
GFKVKDIIDTRTDAIIEGIYDRILWRYSLRDIKDKKGNIILKGNELITKDKAEKIIENKI
KEVEIRSVLTCNSHRGICKKCYGLDLTSHDDINVGEAIGIISAQSIGEPGTQLTMRTFHT
GGVAGVADITQGFSRLMELVDANSNPKSQAIISEIHGKVKSIEKAKENKYGQAIRIKVTV
ENKDVEEERSYEFDANQILRVKKGDTVVPGQKIIEGSIQLQKLLEFTGPNATQTYLIKEI
QKLYRIQGIEIADKYIEVIIRQMLSKQQIIDPGDSDFYNSQIVSEYNLRKVNAELFAENK
NPAIGKQIILGVKPLPLQSDSFLSAASYQRTAESLVNAAISKKVDNLYGVKESLIIGKKI
PVGTGFKILNGKYNIFTDLEEMQETEKEANKNYEKYKEFDVKSIIKDLENEVENLF
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagcaagatgttgataatacaaaaaatattagttctagtgatatttttaaaatt
aaaaaagtaagaattagaattgctttaaatgaagatatagaagaatgatcttcaggagaa
gtaacaaaacctgaaacaataaattataaaactcataaaccagaaaaagatggtttgttt
gatgaaaaaatttttggtccaactaaagattttaagtgtcctgtttgtggtaaaaaacat
aagcgttcagatttaggaaaagtgtgcagtaattgtggtgaagcaattattgaatcaaaa
atggtaagaagaagaaaaatgggttatattaaacttgctgttcctattgctcatatttga
tttacaagaatagattattcaattattcgttcggttttaggtttaaagcaagatgattta
gaatcaattctttactttaatgctcatattatttatgataatggtggtcactctgaaata
aaagaaagagatatgatttatattcaaaatgcaccatctatttatcgtaaaatatttact
ttacttctaaatattgaaaaagatgaaaaaagaaaaaaagagatagaagaaaaattaatt
actttagttgaagaatcaaaagctgatattggtcaaagttatggaattgatttttatgat
tataatgattttatttcaaaatattctgatattaaaattggaactggtgctgaaacagtt
aaaaaacttcttgaaaaattagatcttaaaaaagaacaacaagccgttgctcttgaaatt
aaaaaaaatcctaaaaaaacatcaaattttagaagaaataaagttttagaatcatttatt
aaatcaggtcaaaatccttcaataatgattttagaatatattccagttattccggccgac
ttaagacctcttattcaacttgatggaggtagacattccactgttgatataaatgagtta
tatagaagaatcattattagaaacaatcgtttaaaacaatgaaaattaataggtgctcct
aatctaattattcaaaatgaaaaaagaatgcttcaagaatcggttgatgcactttttgat
aatacaagaaagaaaaatccaattaattctaaagataatcgtcctttaaaatctttagct
gaaaatttaaaaggtaaacaaggaagatttagacaaaatttattaggaaaaagagttgat
tattctggacgttcagttattgttgttggaccagaacttaaattacatcaagttggactt
ccgaaacaaatggttgttaaactttttgaaccatttattgttaactatcttgtaaaagaa
ggtgttacaaaaaatattaaacaagctaaaaaaatgatagaaatttttgatgaaaaaatt
tgaaaatatgctggtagagttattaaatctcatcctgttcttttaaatagagcgcctaca
cttcatagactttcaattcaggcctttgaaccagtaattacttcaggtaaagcaattaga
ttacatccacttgttactccttcttttaatgctgattttgatggagatcaaatggcagtg
catgttccgctttcagcaaaagcaaaaaaagaagcaatggagcttatgctttctacaaaa
aatattttaggtccaaaagatgggaaacttattctttctccatctcaagatatagtttta
ggaatttattatttaacaaaatcatattcaaattctttgggctcaaatcattattattct
tcagcaacagatatttataatcttttagttcttgataaattaaatattcattctcacatt
atccttcctttaaaagaatttgcagataaattcaaagaggaaattgaagaaggatataaa
tatttatttacaactgtgggtagaattctctttaatggtgttcttccaaaagattttgtt
tatataaatgatattgaggatttcgaaacatcaaaaattaataaaaaatatttaataaaa
tctgcagggaattttaataaaaaatttgaagaatttaattattcatttaaaccttttaat
aaagaaaaattaacaagagttattgagggtgtttttgatcaaaaaagagaagaaattgta
gatgtacttgatgcaattaaaaatttaggttttaattattcaatgctttctggagtatca
atgagtataaatgatattattgatattaaagataaagatcaagtttttaaagatgctgat
gaaaaagtaaaaaatttacaagacaacacagatgaaggtcttataacagacgatcaaaga
tatatgagtgttttaaaagtttgaagtgaagcaaaagataaaattgaaaaaaaattaaat
gatgaacttagagatttaccagataattcattatttatgatgatggattctggagcaaga
ggaagtatttcaaattttgttcaacttgctggtatgaggggttcaatgtctaaagcagca
catgagtatgctgcacttagaagacaaggtattattgtaagaagtacagaggaaattcca
attagatcatcttttaaagttggacttactccttttgaatattttctttcaacacatggt
gctagaaaaggtctttcagatactgcaacaaaaactgctgaatcaggttatttaacaaga
cgtttagttgatgcagttcaagatgtaacaattattgaggaagattgtaaaacaaatcaa
ggatttaaagttaaagatattattgatacaagaacagatgcaattattgaaggaatttat
gacagaattctttgaagatattctttaagagatattaaagacaaaaaaggaaatattatt
ttaaaaggaaatgaattaattactaaagataaagcagaaaaaattattgaaaataaaatt
aaagaagttgagataagatctgttcttacatgtaattctcatcgtggaatttgtaaaaaa
tgttatggtcttgatttaacatctcatgatgatataaacgttggagaagcaataggaatt
atttctgcgcaatcaattggagaacctggaactcagcttacaatgcgtacattccataca
ggtggtgttgctggtgttgctgatattacacaaggattttcaagacttatggaacttgtt
gatgcaaatagtaatccaaaatcacaagctataatttctgaaattcatggtaaggtaaaa
agtattgaaaaagcaaaagaaaataaatatggacaagcaataagaataaaagtaactgtt
gaaaacaaagatgttgaagaagaaagatcttatgaatttgatgctaatcaaattttaaga
gtaaaaaaaggcgacacagttgttcctggtcaaaaaattatcgaaggatcaattcaactt
caaaaattacttgaatttacaggacctaatgcaacacaaacttatttaataaaagaaatt
caaaaattatatagaattcaaggtattgaaattgctgataaatatattgaagtaattatt
agacaaatgctttcaaaacaacaaattattgatccgggagattctgatttttataattcg
caaattgtttcagaatataatttaagaaaagtaaatgcagaattatttgctgaaaataaa
aatccagctattggaaaacaaattattttaggagtaaaaccattaccactacaatctgat
tcattcctttcagcagcatcatatcaaagaacagcagaatcacttgtaaatgctgcaatt
tctaaaaaagtagataatctttatggtgtaaaagaatcattaattattggtaaaaaaatt
cctgttggaactggatttaaaatattaaatggaaaatataacatttttacagatttagaa
gaaatgcaagaaacagaaaaagaagcaaataaaaattatgaaaaatataaagagtttgat
gtaaaatcaatcattaaagatttagaaaatgaagtagaaaatttattttaa
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integrated database retrieval system
