Candidatus Hepatoplasma vulgare: HPAVJP_2820
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Entry
HPAVJP_2820 CDS
T09842
Name
(GenBank) hypothetical protein
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
hvu
Candidatus Hepatoplasma vulgare
Brite
KEGG Orthology (KO) [BR:
hvu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hvu03019
]
HPAVJP_2820
03009 Ribosome biogenesis [BR:
hvu03009
]
HPAVJP_2820
Enzymes [BR:
hvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPAVJP_2820
Messenger RNA biogenesis [BR:
hvu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPAVJP_2820
Ribosome biogenesis [BR:
hvu03009
]
Prokaryotic type
rRNA helicases
HPAVJP_2820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
PhoH
Motif
Other DBs
NCBI-ProteinID:
BDV02393
LinkDB
All DBs
Position
complement(305457..306581)
Genome browser
AA seq
374 aa
AA seq
DB search
MFIEQSNLNKELKEYLIYKNIKNFSKVQKDVIPLLSKNKSVTVEAPTGSGKTLAFLLPIL
NNLKSEDKINTIIWVPSRELAIQISSVLSEIKKNFPNFTFFNLINNLSTNEDIYFLKKDP
NIIITTPSKLLKIIEREKINFDNLKYLIIDEIDMIYNFGFLEEILIFKEKVIKKDNKTWG
LFSATFPIPLQNFIKNKLQIINTKNIKIVDLDKEKIKINLIRVDESEKLEKLFKLITSDN
LNPYFCLIFAKTNNEVNLIYRYLKEKKVENLYFFNNQLNTKEKNKIIKLIHQDKIVFLIT
TDLIARGLDFPIVTHIINFSYPSDLIFYKHRIGRTNRLNTISGTIYDLISEEDNDKLERI
KDKNKNLIFKKFKI
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgtttatagaacaatctaatttaaataaagaattaaaagaatatttaatctacaaaaat
attaaaaatttttcaaaagttcaaaaagatgtaattccattactttcaaaaaataaaagc
gtcacggtagaagctcctactggatctggaaaaacattagcatttcttcttccgatttta
aataatctaaaatctgaagataaaataaatacaataatttgagtgccctctagagaactt
gcaattcaaattagtagtgttttatctgaaataaagaaaaatttcccaaattttactttt
tttaatttaataaataatctttcaacaaatgaagatatttattttcttaaaaaagatcca
aatataataattacaactcctagtaaattacttaaaataattgaaagagaaaaaataaat
tttgataatttaaaatatttaattattgatgaaattgacatgatttataattttggtttt
ttagaagaaattttaatttttaaagaaaaagttataaaaaaagataataaaacttgaggt
ttattttctgctacctttcctattcctttacaaaattttattaaaaataaattacaaata
ataaatacaaaaaacattaaaatagttgacttagataaggaaaaaataaaaataaattta
ataagggtagatgaatcagaaaaactagaaaaattatttaaacttataacttctgataat
ttaaatccctatttttgtttgatatttgcaaaaacaaataatgaagtaaatttaatttat
agatatttaaaagaaaaaaaagtggaaaacttatatttttttaataatcaattaaataca
aaagaaaaaaataaaattataaaattaattcatcaagacaaaattgtatttttaattaca
acagatttaattgcaagaggattagattttcctattgtaacacacattataaattttagt
tatccttcagatcttatattttataaacatagaatcggaagaacaaatagattaaataca
ataagcggaacaatatatgatttaatttctgaagaagataatgataagttagaaagaata
aaagataaaaataaaaacttaatatttaagaaatttaaaatctaa
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