Haloquadratum walsbyi DSM 16790: HQ_1045A
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Entry
HQ_1045A CDS
T00375
Symbol
topA1
Name
(GenBank) homolog to DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hwa
Haloquadratum walsbyi DSM 16790
Brite
KEGG Orthology (KO) [BR:
hwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hwa03032
]
HQ_1045A (topA1)
03400 DNA repair and recombination proteins [BR:
hwa03400
]
HQ_1045A (topA1)
Enzymes [BR:
hwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HQ_1045A (topA1)
DNA replication proteins [BR:
hwa03032
]
Prokaryotic type
DNA Topoisomerases
HQ_1045A (topA1)
DNA repair and recombination proteins [BR:
hwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HQ_1045A (topA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NucS_N
Zn_ribbon_Top1
Auto_anti-p27
Zn_ribbon_SprT
Zn_ribbon_TFIIB
Zn_ribbon_6
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
CAJ51175
UniProt:
Q18DJ2
LinkDB
All DBs
Position
complement(50610..51362)
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AA seq
250 aa
AA seq
DB search
MDKTIRVFAGDCTTTFEGSDDQTQRGRVVVIIKPDQTVLVHDTDGYQPVAWLTRSDSITV
ESDVGGFGITARAGEQVLRIIGHEVTGHAEYPVTEAGIPVGRHPKSGESLIQTSNMITVI
NSDIKYPLPKGATVQDECCESCGLPMIEATAGERFSICLDRECESLDDAVRERFDDEWTC
PDCGAPMQIIRRSGRLLAGCSGYPACETAFAIPTGVVVDVCSCGLPIFETSRGQQCLDGT
CELLNKTDEG
NT seq
753 nt
NT seq
+upstream
nt +downstream
nt
gtggataaaacaatccgggtctttgccggtgactgtacaacaacatttgagggatcagat
gaccaaacgcaacgtggacgtgtcgttgtaattattaaacccgatcaaactgttctcgtt
cacgacactgatggatatcagcctgtcgcatggcttacacgctctgattcaatcacagtt
gagagcgatgtaggtgggtttggaattaccgcacgggcgggtgaacaggttctgcgcatt
attggacacgaagttactggtcacgcagagtatccggtgacggaggcaggtataccagtc
gggagacatccaaagagtggtgagtcactcattcagaccagtaatatgattactgtaatc
aattctgatatcaaatatcctctgccaaagggtgcaactgtgcaagatgagtgttgtgag
agttgtgggctaccaatgatcgaagcaacagctggcgaacggtttagtatctgtcttgat
cgcgagtgtgagtcgcttgatgacgctgttcgagagcgatttgatgatgagtggacatgc
ccagactgtggagcgccgatgcagattattcggcggagtggtcgattactcgcgggatgc
agtggatatccagcatgcgagactgcgtttgcaatccccacaggtgttgttgttgatgtc
tgctcgtgcggattaccaatattcgagacatcgcggggacagcaatgtcttgatggaacg
tgtgagttactgaacaaaactgacgaaggatag
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