Haloquadratum walsbyi DSM 16790: HQ_2716A
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Entry
HQ_2716A CDS
T00375
Symbol
cdc48b
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hwa
Haloquadratum walsbyi DSM 16790
Pathway
hwa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
HQ_2716A (cdc48b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hwa03019
]
HQ_2716A (cdc48b)
03009 Ribosome biogenesis [BR:
hwa03009
]
HQ_2716A (cdc48b)
04131 Membrane trafficking [BR:
hwa04131
]
HQ_2716A (cdc48b)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hwa04147
]
HQ_2716A (cdc48b)
Messenger RNA biogenesis [BR:
hwa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
HQ_2716A (cdc48b)
Ribosome biogenesis [BR:
hwa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
HQ_2716A (cdc48b)
Membrane trafficking [BR:
hwa04131
]
SNARE
SNARE associated proteins
Others
HQ_2716A (cdc48b)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
HQ_2716A (cdc48b)
Exosome [BR:
hwa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HQ_2716A (cdc48b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_14
TIP49
AAA_22
AAA_33
NPHP3_N
nSTAND3
RNA_helicase
AAA_28
Mg_chelatase
AAA_7
IstB_IS21
ABC_tran
AAA_3
Parvo_NS1
AAA_24
Sigma54_activat
DUF815
NB-ARC
AAA_lid_PRS2_C
AAA_17
Zeta_toxin
AAA_18
SLFN-g3_helicase
TsaE
AAA_30
AAA_11
PhoH
NACHT
AAA_19
bpMoxR
Vps4_C
ATPase_2
ATP-synt_ab
Bac_DnaA
Motif
Other DBs
NCBI-ProteinID:
CAJ52824
UniProt:
Q18GS2
LinkDB
All DBs
Position
2010479..2012740
Genome browser
AA seq
753 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAVDRDVAAELDLEGGDYIRIESGDGTAIARVWPGYPDDQGTG
VIRIDGQLRQQADVGIDDTVDVEKADISPAKHVSIALPQNLRISGNIGAHLRDKLSGQPV
TQGQNIRVPFGFGFMSSSAQPIPMKIASTEPSGTVIVTDSTEVTLSQQPAEDIQAGESES
SNTPAVTYEDIGGLERELEQVREMIELPMRHPELFQRLGIEPPKGVLLHGPPGTGKTLIA
KAVANEIDASFHTISGPEIMSKYYGESEEQLREIFEEAEEEAPSIVFVDEIDSIAPKRGE
AGGDVERRVVAQLLSLMDGLDERGEVVVIGATNRVDALDPALRRGGRFDREIEVGVPDRE
GRKEILQVHTRNMPLSDSVNLDEYADNTHGFVGADIESLAKEAAMNALRRIRPELDLEAD
EVDADVLESLSVTETDFKDAIRGIEPSALREVFVEVPDVTWGDVGGLTETKERLRETIQW
PLDYPDVFEEMDIQSAKGVLMYGPPGTGKTMLAKAVANESESNFISVKGPELLDKYVGES
EKGVRDIFKKARENAPTVVFFDEIDSIATERGGTSGDSGVSERVVSQLLTELDGLESLED
VVIIATTNRPDLIDAALLRPGRLDRHVHVPVPSETAREAIFEVHTEEKPLADSVSLSRLA
SRTEGYVGADIEAVCREASMAASREFINNVSPEEVKESVGNIRVTMGHFEDALDEVGPSV
TQETREQYEQIEQRFETSNVERQPEAGVGRTFQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttactgtcaaaccactcaaacagaaggatgctggtcgtggacttgccgcagtt
gaccgtgatgtcgccgctgaactcgatcttgagggtggcgattatatccgaatcgaaagc
ggagatggcacagcaatcgctcgagtatggcctggctatcccgatgaccaaggcacaggt
gtcattcggattgatgggcaattgcgtcaacaggcagacgttggaattgacgacacggtt
gatgtagaaaaggctgatatcagcccggcaaaacacgtctcgattgcacttccacagaat
cttcgaattagtggaaacattggcgcacaccttcgagataagctctcgggacagccagtg
acacaagggcagaacatccgggttccattcggattcgggttcatgtcctcatcagcacag
ccaatcccgatgaagatcgcatcgacagaaccgtcaggaaccgtaattgtgaccgattca
acagaagtcacactcagtcaacagccggctgaggatatccaagctggtgaaagtgagagt
tcaaacactccagccgttacctatgaggatattggcggtctcgaaagagaacttgagcaa
gttcgagagatgattgagttgccgatgcgtcatcctgagttattccaacggcttggcatt
gaaccaccgaagggagtgttgttacacggtccaccaggaaccgggaagacacttatcgcc
aaggctgttgcgaatgagattgatgcaagcttccatacaatctctggtccagagattatg
tcgaaatattacggagaatcggaggaacaacttcgtgaaatattcgaagaagccgaagag
gaagctccatcgattgtctttgttgatgagattgactcaatcgcgccaaaacggggcgaa
gccggtggtgacgttgagcgacgcgtcgttgcacagctgctctcgctaatggatgggctt
gatgagcgtggtgaggttgtcgtcatcggtgcaacgaatcgtgtcgacgcacttgatcca
gcattgcgtcgtggcggtcgatttgatcgcgaaattgaggttggtgtcccagatcgtgag
ggtcgcaaagagattctgcaagtgcacacgcggaatatgccgctttccgatagtgtcaat
cttgatgagtatgcggacaacactcatggctttgtcggtgcagatatcgaaagtctcgcc
aaagaagcagcaatgaatgcgcttcgccgaatccgtccagagcttgatcttgaggctgac
gaggttgatgcagatgtcctcgaatcgttgtcggtgactgaaactgacttcaaggatgca
attcgggggattgagccatctgcccttcgtgaagtatttgttgaagtccctgatgtgacg
tggggtgatgttggtggtctaacagagacaaaagagcgattacgcgagacgattcaatgg
ccgcttgattatccagatgtattcgaggagatggatatacaatcagctaagggcgtattg
atgtatggtccgcctgggacaggcaagacaatgcttgcaaaagcggttgcaaacgaatct
gaatcgaatttcatctcggtaaagggtccagagctactggataaatatgttggtgaatca
gagaagggtgttcgcgacatcttcaagaaggcacgagagaacgccccaacggtggtgttc
tttgatgagatcgattcaatcgcgactgaacgcggaggaacatcaggcgattcaggcgtt
tcagaacgagttgtttcacagctactgaccgaactcgatggacttgagtcactcgaagat
gtggttatcatcgcaacaacaaatcggcctgatctcatcgacgctgcgttactacgcccc
ggacggttagaccgtcatgtgcatgtgcctgttccaagtgaaactgcgcgagaggcgatc
tttgaggtgcacaccgaagagaagccattagcggatagcgttagtctatcacgacttgcc
tcacgcactgaaggatatgttggtgctgatattgaggcggtatgtcgtgaagcatcaatg
gctgcaagtcgagagtttatcaataatgtctcacctgaagaggtgaaagagtcggtcggt
aatattcgagtgacgatgggacacttcgaggatgcccttgatgaggttggtccaagcgtg
actcaggaaacacgcgaacaatatgagcaaatcgagcagcgctttgagacaagcaatgtc
gaacgacaaccagaagctggcgtcggtcggaccttccagtga
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