Haloquadratum walsbyi DSM 16790: HQ_3177A
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Entry
HQ_3177A CDS
T00375
Symbol
cdc48a
Name
(GenBank) AAA-type ATPase (CDC48 subfamily)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hwa
Haloquadratum walsbyi DSM 16790
Pathway
hwa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
HQ_3177A (cdc48a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hwa03019
]
HQ_3177A (cdc48a)
03009 Ribosome biogenesis [BR:
hwa03009
]
HQ_3177A (cdc48a)
04131 Membrane trafficking [BR:
hwa04131
]
HQ_3177A (cdc48a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hwa04147
]
HQ_3177A (cdc48a)
Messenger RNA biogenesis [BR:
hwa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
HQ_3177A (cdc48a)
Ribosome biogenesis [BR:
hwa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
HQ_3177A (cdc48a)
Membrane trafficking [BR:
hwa04131
]
SNARE
SNARE associated proteins
Others
HQ_3177A (cdc48a)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
HQ_3177A (cdc48a)
Exosome [BR:
hwa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HQ_3177A (cdc48a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
CDC48_2
RuvB_N
AAA_5
TIP49
AAA_22
AAA_33
AAA_2
AAA_14
nSTAND3
IstB_IS21
NPHP3_N
AAA_28
RNA_helicase
AAA_7
Mg_chelatase
ABC_tran
AAA_18
Sigma54_activat
NB-ARC
AAA_17
SLFN-g3_helicase
ATPase
Parvo_NS1
DUF815
AAA_24
AAA_3
Zeta_toxin
AAA_11
TsaE
AAA_30
AAA_19
bpMoxR
PhoH
AAA_lid_PRS2_C
NACHT
Vps4_C
DUF6985
Motif
Other DBs
NCBI-ProteinID:
CAJ53276
UniProt:
Q18FI1
LinkDB
All DBs
Position
2505690..2507918
Genome browser
AA seq
742 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGADTTAAKVWRADRQDWN
TDTVRVDGFTRQNADVSIGERVTIRKAETTKAEKLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVNTEPDGVCLVTEDTEVELREEPISGFE
KTGGGITYEDIGGLQNEIQRVREMVELPMKHPQIFKKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLETRGQVIVIGATNRVDSVDPALRRPGRFDREIEIGVPDEV
GRKEILQIHTRGMPLSDDVSLDYLADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DVPPSLIDRMIVKRADFNDALSDVEPSAMREVLVELPKVSWDDVGGLEGPTQKVKESVEW
PITSRGRFERMGIDAPKGVLLYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTVIFFDELDSLAPSRGGGTGNNVSERVVNQLLTELDGLEENGNV
MVVAATNRPDMIDPALIRSGRFDRLVLIGQPGEEGREQILKIHTRNSPLAPDVSLREIAE
ITDGYVGSDLESIAREAAIEALREDGDAQEIEMRHFRKAMESVRATITDDLMNYYEDMQE
EFKGGTQNRLTGGRQDGRIGFQ
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaacttgaagtggcgaaagcgtacccaaatgactcagggcgcggtatc
gcccgtcttgacccggacacgctactccatcttaaactctcaccaggcgatattatcgag
attgaaggcgcagatactactgcagcgaaggtatggcgcgccgacagacaagactggaac
actgacactgttcgtgtcgacggctttacgagacaaaacgctgatgtgagtatcggcgaa
cgcgttaccatacggaaagctgaaacaacaaaagctgaaaaactcgtactagcaccgcct
gaagaggcaagcgtccagtttggctcggatgctgctgggatggttaaacgacaaattctg
aagcgtccggttgttgagcgtgatatcgttcctgtgatgtcatcgacaaatcatccattc
atgcgctcacccggtcaagcaatcccactcattgcagtcaatacagaaccggatggcgtc
tgtctggtgactgaagatacagaagttgagctccgcgaagagccgatctcaggatttgag
aaaaccggtggtggaataacgtatgaagatatcggtggactccaaaacgagattcagcgc
gttcgcgagatggttgaattgccgatgaaacacccacagattttcaagaaattgggaatt
gagccaccacagggtgttttacttcatggtccaccagggacaggtaagacgcttcttgca
aaggctgtcgccaatgaaacatctgcaagtttcttctcaattgcaggtccagaaattata
tcgaaatattacggtgaatctgaacagcaactccgtgagatatttgaggatgcgactgag
gaatcaccatcaattatctttattgatgagctcgattcaatcgcgccaaaacgcgaagat
gttactggagaggttgagcgccgagttgttgcacaactgttaacgatgatggatgggctt
gaaacccgtgggcaggtcattgtcattggcgcaacaaatcgtgtcgacagtgttgatcct
gcactgcgtcgcccaggacgatttgaccgcgagattgaaattggcgtacctgatgaggtt
ggtcggaaggaaatcctccagattcacacccgcggcatgccgctttccgatgatgtctca
ctagattatcttgcagatgagactcatggctttgtcggcgctgatattgagtcactgaca
aaggaagcagcaatgaaggcactacggcgttacctaccagaaatcgatcttgatgaggag
gatgttccgccaagtcttattgatcggatgatcgtcaagcgcgccgacttcaacgatgcg
ctttctgatgttgagccctctgcgatgcgtgaggtgcttgttgagctgccaaaggtctcg
tgggatgatgttggcggacttgagggtccaactcagaaggtaaaagaaagcgttgagtgg
ccaatcacatctcgtggtcggtttgaacggatgggtatcgacgcgcccaaaggagtctta
ttatatggaccgccaggaaccggaaagacgctcattgcgaaggctgtcgctaatgagacg
aatgcaaactttatctcagtgcgaggtccacaactactctcaaagtgggtcggtgagtca
gagaaggcgattagacagacattccgaaaagcacgacaggttagtccgactgttatcttc
tttgacgaactcgatagccttgccccaagccgaggcggtggaacaggaaacaatgtctct
gaacgagttgtcaatcagctattgacagagcttgatgggcttgaagaaaatggaaatgta
atggtcgttgctgcaacgaatcgaccggatatgattgatccagcactcatccgttcaggt
cgattcgaccgattggtgcttattggtcagcctggcgaggaaggtcgtgagcagattctc
aagatccacactcgtaactcaccacttgcgccagatgtgagtctcagagagattgcagaa
ataaccgatggctacgttggatctgatcttgagtcgatcgcgcgcgaagccgcaattgaa
gcgcttcgtgaggatggtgacgcacaggagattgagatgcgtcacttccgtaaagcaatg
gaatccgtgcgagcaacaatcactgatgacctcatgaactattatgaggacatgcaggag
gaattcaagggcggaacgcagaatcgccttactggcggacgacaggatgggcggattggg
ttccaataa
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