Haloquadratum walsbyi DSM 16790: HQ_3720A
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Entry
HQ_3720A CDS
T00375
Symbol
rad3b
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hwa
Haloquadratum walsbyi DSM 16790
Pathway
hwa03022
Basal transcription factors
hwa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hwa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HQ_3720A (rad3b)
09124 Replication and repair
03420 Nucleotide excision repair
HQ_3720A (rad3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hwa03021
]
HQ_3720A (rad3b)
03036 Chromosome and associated proteins [BR:
hwa03036
]
HQ_3720A (rad3b)
03400 DNA repair and recombination proteins [BR:
hwa03400
]
HQ_3720A (rad3b)
Enzymes [BR:
hwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
HQ_3720A (rad3b)
Transcription machinery [BR:
hwa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HQ_3720A (rad3b)
Chromosome and associated proteins [BR:
hwa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
HQ_3720A (rad3b)
DNA repair and recombination proteins [BR:
hwa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HQ_3720A (rad3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
nSTAND3
Zot
ATPase
HBB
PhoH
AAA_34
DAP3
TPR_MLP1_2
AAA_11
Motif
Other DBs
NCBI-ProteinID:
CAJ53806
UniProt:
Q18E27
LinkDB
All DBs
Position
3110715..3112910
Genome browser
AA seq
731 aa
AA seq
DB search
MSTTGNHKRFFPYEEPYPNQHSAMSEIAEALDEQRDVLFEGAPGTGKTLSALCPAIAYAR
QTDKTVVITTNVHQQMRQFVADARAIVHSGIDTIRAVVFKGKSSMCHIDVGYQECQTLRD
TTRSLVDKERERTQLREQATALLDEIREGNDGAASARSAVTDELESVTSEIEDLSSGNIC
EYYRNNLTEADATEAFFQWLFDDVRTAEEIYAYAEQRQLCGYELLKEGIEGVDLVICNYH
HLLDPAIREQFFRWLGRDPDDIVTIFDEAHNIESAARDHAGRTLTENTLEEALTEIKDCE
DSRAEPAANVFEAFLTALQTTYADAFGFGEREQVTSEWYDLTVANTDRRDDLTLEFLQQY
EGRGIDTEIDLARQLAESIDSRYETAYKNGETATRKECQALHAATFLNAWMTDSDTVGTH
PLISVRRDETTNEVYARAELYTCIPRAVTADLFDEVHASVLMSATLRPFDVAEDVLGLSN
PVQMAYELAYPAENRRTLAVKTPALFSSARNDPDTQSIIADTLADAARFTPGNTLFFFPS
YAEAERYATQLRQHDAVSKPVMLDESGTETEPLRQSFVGQNGCVLCTSLWGTLAEGVSFD
DNDARTVAVVGVPYPHLSERAEAVQSAYDRAYSGRKDAGWRYGIEIPTIRKTRQALGRVI
RSPSDYGVRLLIDKRYTQEGAEMGKYGVRDQFPPEERAELIDVEPSKVQFSLLNFYDDLD
AYDETAPSPSP
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgacaactggcaatcacaaacggttctttccatatgaagaaccatatccaaaccaa
cattcggcaatgtctgagattgccgaagcgcttgatgagcaacgggacgttctcttcgaa
ggggcacctggaacaggaaaaacgctctctgcactgtgtccggcgattgcgtacgctcga
cagaccgataaaacagttgtcattacaacgaatgtccatcagcagatgcggcagttcgtc
gcggacgcacgcgctattgttcacagtggtatagacacaatccgcgctgtggtgttcaaa
ggaaaatcgtcaatgtgtcatatcgacgttggatatcaagaatgtcaaacgcttcgagat
acgacgcgaagtcttgtagataaagagcgtgagcgtacacaactccgcgagcaggcaaca
gcactgttagatgagattcgtgagggaaatgatggcgccgcatcagcgcgaagtgcggtg
acagatgagcttgagtcagtcacatccgagattgaggatctttcttcagggaacatctgc
gaatattatcgcaataatcttactgaagctgacgcaactgaggcgttttttcaatggcta
tttgatgatgtccgaacggctgaagaaatttatgcatacgctgagcaacgacaattatgc
ggatatgagctcctcaaagaaggaatcgagggtgtggatctagttatttgtaactatcac
catctgctcgacccggcgattcgtgagcaatttttccgctggcttggtcgtgacccagac
gatattgttaccatctttgatgaagcacataacatcgagtcagccgcacgtgatcacgct
gggcggacattgacagaaaacacattggaggaggcacttactgagattaaagactgtgag
gactcacgcgctgaacctgcagcaaatgtatttgaggcatttctcacagcacttcaaaca
acgtatgctgacgcatttggattcggtgagcgcgaacaggtcacatcagagtggtatgac
ctcacggttgctaatactgaccgccgagacgatctaacactggagtttcttcaacaatat
gagggtcgggggattgataccgaaattgatcttgcacgccaacttgctgagtcaatcgac
tcacggtatgaaacagcgtacaaaaacggggaaacagcaacacgaaaagaatgtcaggca
ctacacgcggcaacatttctcaatgcatggatgacagatagtgatacagtcggcacccat
ccgctaatctcagttcgacgcgatgagacaacaaatgaagtatatgcccgcgcagagctg
tacacatgcattccaagagctgttactgcagatctatttgatgaagttcacgcaagtgtc
ttgatgtcggccacattacgcccattcgacgtcgctgaggatgtacttgggttatcaaat
ccggttcaaatggcatatgaactagcatacccagcggagaaccgtcgaacactcgcagtt
aaaacaccagcattgtttagctcggcacggaatgatcctgatacacaatcgattatcgct
gacacgcttgcggatgctgcacgcttcacgcctggaaatacattattcttctttccatcg
tatgcagaagccgaacgttatgcaacgcagcttagacagcacgatgctgtctcaaagccg
gtgatgcttgatgaatcaggtactgaaacagaaccgctccggcaatcatttgttggtcag
aacggatgcgtgctttgcacctcattatgggggacacttgcagagggtgtgagttttgat
gataatgatgcacggactgttgctgtcgttggagtcccgtatccgcatctttctgaacga
gctgaggcagtccaaagcgcatatgatcgagcgtatagtgggcgtaaagatgccggatgg
cgatatgggattgaaatcccgacaatccgaaaaacacggcaagcacttggtcgtgttatt
cgctcaccatcagattatggagtgcgtctgctgattgataagcgatatacacaggaaggt
gctgagatgggaaagtatggtgtccgagatcaattcccacctgaagagcgtgcagagttg
attgatgttgagccatcaaaagtacagttttcgttattaaacttttatgatgatcttgat
gcgtatgatgaaacagcaccatctccatctccttag
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