Haloquadratum walsbyi C23: Hqrw_1188
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Entry
Hqrw_1188 CDS
T01942
Symbol
tfbA1
Name
(GenBank) transcription initiation factor TFB
KO
K03124
transcription initiation factor TFIIB
Organism
hwc
Haloquadratum walsbyi C23
Pathway
hwc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hwc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hqrw_1188 (tfbA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hwc03021
]
Hqrw_1188 (tfbA1)
Transcription machinery [BR:
hwc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Hqrw_1188 (tfbA1)
Prokaryotic type
Archaeal type
TFB
Hqrw_1188 (tfbA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Trm112p
Sigma70_r4
Anti-TRAP
HTH_Tnp_ISL3
Zn_ribbon_RRN7
A2L_zn_ribbon
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
CCC39156
UniProt:
G0LGD6
LinkDB
All DBs
Position
210308..211408
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AA seq
366 aa
AA seq
DB search
MSEKTTHTCENARTRVESNNESEVTTNSAHDRIRTDGGTVGQRWVRPGEKESEEESVSES
EEETTSESLVCPECSGNVVADDEHGETICDDCGLVITEDSVDRGPEWRAFDAKEKDQKSR
VGAPTTNTMHDKGLSTNIDWRDRDAYGNSLSSNQRQKMQRLRKWNERFRTRDSKERNLKQ
ALGEVDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGVSTSCVYAAARMAGVPRS
LDEIAEVSRVPKSEVARTYRYIARELSLEVKPADPEQYVPRFASELGLSDESTLRARQLL
QNAKEKGVHSGKSPVGLAAAAVYAAALLTNEKTTQAAVSEVADISEVTIRNRYHELLEAK
DAVGAT
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaaaaccacacacacttgcgagaacgcgagaacgagagtcgagtcgaataat
gaatcagaagtaacaacaaacagtgcacacgaccgcattcgaactgacggtggtactgtt
ggacaacgatgggttcgccctggcgaaaaagaatctgaagaagagtctgtgtccgagtca
gaagaggagacaacaagtgaaagtcttgtctgcccagaatgcagcggcaatgttgtcgct
gatgatgagcatggagagacaatttgtgatgactgtggtctcgtgattacggaggactct
gttgatcgtggtcctgaatggcgtgcgtttgatgcaaaagaaaaagaccagaagtcccgt
gttggcgccccaacaacaaatacaatgcatgataaggggctttcgacaaatattgactgg
cgagaccgcgatgcatatggcaattctctatcctcaaatcagcgacagaagatgcaacga
ctccgaaagtggaatgaacgattccgaactcgtgattcaaaggagcgaaacctcaaacaa
gcacttggtgaggttgatcgaatggcctcagcgcttgggcttcccgaaaatgttcgtgaa
acggcttctgtgatttatcgtcgggcgctcgatgaagatctactacctggacggtcaatt
gagggcgtttcaacatcatgtgtctatgcggctgcacgaatggctggtgtgccccggtca
ctcgatgagattgcagaggtatcacgagttccaaaaagtgaggttgcacggacataccga
tacattgcccgagaactatcattagaggtaaagcctgcggatccagagcaatacgttcct
cgatttgcctctgaacttgggctttcggatgaatcaacgcttcgtgcgcgtcaactatta
cagaatgcaaaagaaaagggcgtgcactcaggaaagtccccagttggacttgctgctgcg
gcagtgtatgctgcggcgctgttaaccaatgaaaaaacaacacaagcagcagtaagtgag
gtagccgatatctctgaggtaacaatccgaaaccgatatcatgagcttcttgaggcgaaa
gacgcagttggagccacataa
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