Haloquadratum walsbyi C23: Hqrw_1806
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Entry
Hqrw_1806 CDS
T01942
Symbol
tfbA4
Name
(GenBank) transcription initiation factor TFB
KO
K03124
transcription initiation factor TFIIB
Organism
hwc
Haloquadratum walsbyi C23
Pathway
hwc03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hwc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hqrw_1806 (tfbA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hwc03021
]
Hqrw_1806 (tfbA4)
Transcription machinery [BR:
hwc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Hqrw_1806 (tfbA4)
Prokaryotic type
Archaeal type
TFB
Hqrw_1806 (tfbA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Zn_ribbon_tTFIIB
Zn_ribbon_PaaD
Ribosomal_S27e
DUF5817
Trm112p
Cyclin_C
Sigma70_r4
Zn_ribbon_IS1595
Zn_ribbon_5
Auto_anti-p27
DUF7573
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
CCC39735
UniProt:
G0LI15
LinkDB
All DBs
Position
852191..853231
Genome browser
AA seq
346 aa
AA seq
DB search
MTNNSHQSPAVTRARARRSDERTETAQQDADTTVSDETTRSAESTETVRCPECESTQLIT
DDERGETVCADCGLVVDEDSIDRGPEWRAFDSAERDQKSRVGAPTTNLMHDKGLSTNIGW
QDKDAYGNSLSSTQRQKMQRLRTWNERFRTRDSKERNLKQALGEVDRMASALGLPENVRE
TASVIYRRALDEELLPGRSIEGVATASLYAAARQAGTPRSLDEITNVSRVGRDEIARTYR
YVVRELKLQIKPADPEQYVPRFASDLDLSDEAERRARQLLRSAKEQGVHSGKSPVGLAAA
AVYAASLLINEKVTQKEVSSVANISEVTIRNRYHELLEAEEQLSTA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgactaacaatagtcaccaatcccctgctgtcacgcgcgcacgcgcgaggaggtcagac
gaacgcacggagactgctcaacaagatgcggatacaactgtgtctgatgagacgacacgg
tctgcagaatctacagagacagtccgctgtccagaatgtgagtcgactcaacttatcaca
gatgatgaacgtggtgagacagtctgtgcagactgtggacttgttgttgatgaagattca
attgatcgtggaccagagtggcgtgctttcgatagtgctgagcgtgatcaaaagtctcgt
gttggcgccccaacgacaaatctgatgcatgataaaggcttgtcaacaaacattggctgg
caagacaaagacgcatacggaaactctttgtcatcaactcagcgacaaaagatgcagcgg
cttcgaacatggaatgagcgattccgcactcgggattcaaaggaacggaatctcaagcag
gcacttggtgaggtcgaccgaatggcatcagcgcttgggcttcctgaaaatgttcgtgaa
acggcttctgtgatttatcgtcgtgcgcttgatgaagaactactgcctggtcgatcaatt
gagggtgttgcgactgcatcgttgtatgctgctgctcgacaagctgggacgccgcgatca
cttgatgaaattacaaatgtctcacgagtgggtcgcgacgaaattgcgcgcacatatcgg
tatgtcgtgcgtgaactcaaactccaaatcaagccggctgatccagagcagtatgtgccg
cgatttgcctcggatcttgacctctcagatgaagctgaacggcgtgctcgtcaacttctt
cgtagtgcaaaagagcaaggtgtccattcggggaaatccccggttggtcttgcagcagcg
gctgtgtatgctgcatcattactcatcaatgaaaaagtaacacaaaaagaggtcagcagt
gtcgcaaatatctctgaggtaacaattcggaatcgatatcacgagctgcttgaagcggaa
gaacaactttctaccgcgtaa
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