Haloquadratum walsbyi C23: Hqrw_2828
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Entry
Hqrw_2828 CDS
T01942
Symbol
rad25b
Name
(GenBank) DNA repair helicase Rad25
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hwc
Haloquadratum walsbyi C23
Pathway
hwc03022
Basal transcription factors
hwc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hwc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hqrw_2828 (rad25b)
09124 Replication and repair
03420 Nucleotide excision repair
Hqrw_2828 (rad25b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hwc03021
]
Hqrw_2828 (rad25b)
03400 DNA repair and recombination proteins [BR:
hwc03400
]
Hqrw_2828 (rad25b)
Enzymes [BR:
hwc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hqrw_2828 (rad25b)
Transcription machinery [BR:
hwc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Hqrw_2828 (rad25b)
DNA repair and recombination proteins [BR:
hwc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Hqrw_2828 (rad25b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
ERCC3_RAD25_C
Helicase_C
SNF2-rel_dom
DEAD
AAA_22
TrmB
AAA_5
HTH_11
MarR
AAA_30
AAA_25
SMC_N
AAA
RPA_C
HTH_5
Motif
Other DBs
NCBI-ProteinID:
CCC40640
UniProt:
G0LJ72
LinkDB
All DBs
Position
1838515..1840587
Genome browser
AA seq
690 aa
AA seq
DB search
MGKKSKSDASVESAESIDTQTETAVETNDHPRSNKTETSDRLSTDQIYDIFEAARRPVVT
ASTIARYLSRNQATITEQLSTLIDSGVIDNITVDDDPVVYYPTSLSEMSTRERIVVFPDR
REIVVDNPTQYTRAQLTQFAHLVDTTGERQPVDQHGPQVSEEMVDQDGISITDPEKTTIV
EDEDAETDADTRAPRQPQSRGYLYRVRQEDIWQAPFDDLGSLISVIRSALPRRVPGLESW
IETQWKRANRFRLFTHDDGYVVLEAASESLMGNIARQKLDEEQLIAPISDTQNWVRDGAE
AAIKRTLYEAGYPVIDERELETGEPLAVTLEAELRSYQQDWVNNFLDQRAGVLVGPSGSG
KTVTAIGALAAIGGETLILVPSRELASQWRAELIQHTDLNNDQIGEYHGGKKTVQSVTIA
TYQTAGMDRHRSLFDSREWGLIIYDEVHHIPAAVYRRSADLQTKHRLGLSATPVREDDKE
TEIFTLVGPPIGTDWSALFEAGYVQEPYVEIQYVPWKDELSQNEWANADGRDRRRLAAEN
PQKITTTKKLLGMHSDASALVFVEWLDHGEALADALDAPFVSGEMPHYRRDQVFESFRDD
EISVLVISRVGDEGIDLPNAELAVVASGLGGSRRQGAQRAGRTMRPTGSAQVYVLATRGT
TEEEFAQRQLRHLAEKGIRVTERDVAEEDV
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagaagtctaaatctgatgcgtctgtggaatctgcggaatctatagacacacag
accgaaacagcggtcgagacgaatgatcacccccggtcgaataaaaccgaaacatcggat
agactttctacggatcagatttatgatatatttgaggctgctcgtcggcccgttgtcacc
gcttcaaccattgcacgttatttgtcgagaaatcaagcaacaataacagagcaattatcg
acgttaattgatagtggagtcattgataatattacagttgatgacgatccagttgtatat
tacccaacatcactttcggaaatgtcgacacgtgaacgcattgttgtctttccagaccgc
cgggagattgtagttgataatccaacacaatatacgcgtgcgcaactcactcagttcgcg
catcttgtcgacaccactggcgaacgacaaccagtagatcagcatggaccacaggtaagt
gaagagatggttgatcaagatggcattagcataactgaccctgagaagacaacaatcgtt
gaagatgaagacgcagagacggacgcagacacacgtgccccacgacagcctcagtcgcgt
ggttatctctatcgtgtgcgtcaagaagatatctggcaagcaccgtttgatgatctcgga
agtctcatctcagtgattcgatcagcacttccgcggcgtgttccaggattagaatcttgg
attgagacgcagtggaagcgagcgaatcggtttcggctctttacacacgatgatgggtat
gtggtacttgaagccgcgtcagaaagtttgatggggaatatcgcaagacaaaaacttgat
gaagagcaacttattgcaccaatctcggatacacagaattgggttcgtgacggtgctgag
gcagcgattaaacgcacgttatatgaagctggatatcctgtaatcgatgaaagagagctt
gagactggagaaccacttgcagtcacactcgaggctgaacttcgttcatatcaacaggat
tgggttaataattttcttgaccagcgtgcgggtgttcttgttggaccctccgggtctggc
aagacagtaacagctattggtgcactggcagcgattggtggtgagacgctcattcttgtt
ccttcacgagaacttgcctcgcagtggcgtgcagagttaattcaacacactgatctaaac
aatgatcaaattggggagtatcacggcggaaaaaagacagtacagtcagtaacaattgcg
acctatcaaacggctggaatggatagacaccgatcattgttcgactcacgtgagtggggg
ttaattatctatgatgaagttcatcatatccctgctgcggtgtatcggcggagtgcagac
ttgcagacaaaacatcgacttgggctttctgcaacaccagtccgtgaagatgataaggaa
acagagattttcacacttgtcggtccgcctatcggaactgattggtcagcactgtttgag
gcaggatatgtacaggaaccatatgtcgagattcaatatgttccatggaaagatgaactc
tcacagaatgagtgggcaaatgccgatggtcgtgatcgccgacgattagccgcagaaaac
ccacagaagataacaacgacaaagaaattgcttgggatgcattctgatgcgagtgctctt
gtgttcgttgaatggcttgaccacggagaggcacttgcagacgcgcttgacgctccattc
gttagtggtgaaatgccacattatcgacgagatcaagtatttgagtcatttcgtgacgac
gagatatcagtactcgttatatcacgcgtcggtgatgaggggattgatcttccaaatgct
gagttggcagttgttgcatcaggtcttggtggttctcggcgacaaggtgcccagcgtgca
ggtcggacgatgcgtccaacaggaagtgcacaggtctacgttcttgcaactcggggtaca
accgaagaggagtttgcgcaacgtcagcttcgacacttggctgagaaagggatccgtgtg
acagagcgtgatgtagctgaggaagatgtgtga
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