Haloquadratum walsbyi C23: Hqrw_4135
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Entry
Hqrw_4135 CDS
T01942
Symbol
rad3b
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
hwc
Haloquadratum walsbyi C23
Pathway
hwc03022
Basal transcription factors
hwc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hwc00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Hqrw_4135 (rad3b)
09124 Replication and repair
03420 Nucleotide excision repair
Hqrw_4135 (rad3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hwc03021
]
Hqrw_4135 (rad3b)
03036 Chromosome and associated proteins [BR:
hwc03036
]
Hqrw_4135 (rad3b)
03400 DNA repair and recombination proteins [BR:
hwc03400
]
Hqrw_4135 (rad3b)
Enzymes [BR:
hwc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Hqrw_4135 (rad3b)
Transcription machinery [BR:
hwc03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Hqrw_4135 (rad3b)
Chromosome and associated proteins [BR:
hwc03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Hqrw_4135 (rad3b)
DNA repair and recombination proteins [BR:
hwc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Hqrw_4135 (rad3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
nSTAND3
HBB
Zot
ATPase
PhoH
AAA_34
AAA_11
DAP3
TPR_MLP1_2
Motif
Other DBs
NCBI-ProteinID:
CCC41858
UniProt:
G0LFU5
LinkDB
All DBs
Position
3127084..3129279
Genome browser
AA seq
731 aa
AA seq
DB search
MSTTGNHKRFFPYEEPYPNQHSAMSEIAEALDEQRDVLFEGAPGTGKTLSALCPAIAYAR
QTDKTVVITTNVHQQMRQFVADARAIVHSGIDTIRAVVFKGKSSMCHIDVGYQECQTLRD
TTRSLVDKERERTQLREQATALLDEIREGNDGAASARSAVTDELESVTSEIEDLSSGNIC
EYYRNNLTEADATEAFFQWLFDDVRTAEEIYAYAEQRQLCGYELLKEGIEGVDLVICNYH
HLLDPAIREQFFRWLGRDPDDIVTIFDEAHNIESAARDHAGRTLTENTLEEALTEIKDCE
DSRAEPAANVFEAFLTALQTTYADAFGFGEREQVTSEWYDLTVANTDRRDDLTLEFLQQY
EGRGIDTEIDLARQLAESIDSRYETAYKNGETATRKECQALHAATFLNAWMTDSDTVGTH
PLISVRRDETTNEVYARAELYTCIPRAVTADLFDEVHASILMSATLRPFDVAEDVLGLSN
PVQMAYELAYPAENRRTLAVKTPALFSSARNDPDTQSIIADTLADAARFTPGNALFFFPS
YAEAERYATQLRQHDAVSKPVMLDESGTETEPLRQSFVDQNGCVLCTSLWGTLAEGVSFD
DDDARTVAVVGVPYPHLSERAEAVQSAYDRAYSGRKDAGWRYGIEIPTIRKTRQALGRVI
RSPSDYGVRLLIDKRYTQEGAEMGKYGVRDQFPPEERAELIDVEPSKVQFSLLNFYDDLD
AYDETVPSPSP
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgacaactggcaatcacaaacggttctttccatatgaagaaccatatccaaaccaa
cattcggcaatgtctgagattgccgaagcgcttgatgagcaacgggacgttctcttcgaa
ggggcacctggaacaggaaaaacgctctctgcactgtgtccggcgattgcgtacgctcga
cagacagataaaacagttgtcattacaacgaatgtccatcagcagatgcggcagttcgtc
gcggacgcacgcgctattgttcacagtggtatagacacaattcgcgctgtggtgttcaaa
ggtaaatcgtcaatgtgtcatatcgacgttggatatcaagaatgtcaaacgcttcgagat
acaacgcgaagtcttgtagataaagagcgtgagcgtacacaactccgcgagcaggcaaca
gcactgttagatgagattcgtgagggaaatgatggcgctgcatcagcgcgaagtgcggtg
acagatgagcttgagtcggttacatccgagattgaggacctttcttcagggaacatctgt
gaatattatcgcaataatcttactgaagctgacgcaactgaggcgttttttcaatggcta
tttgatgatgtccgaacggctgaagaaatttatgcatacgctgagcaacgacaattatgc
ggatatgagctcctcaaagaaggaatcgagggtgtggatctggttatttgtaactatcac
catctactcgacccggcgattcgtgagcaatttttccgctggcttggtcgtgatccagac
gatattgttaccatctttgatgaagcacataacatcgagtcagccgcacgtgatcacgct
gggcggacattgacagaaaacacattggaggaggcacttactgagattaaagactgtgag
gactcacgcgctgaacctgcagcaaatgtatttgaggcatttctcacagcacttcaaaca
acgtatgctgacgcatttggattcggtgagcgcgaacaggtcacatcagagtggtatgac
ctcacggttgctaatactgaccgccgagacgatctaacactggagtttcttcaacaatat
gagggtcgggggattgataccgaaattgatcttgcacgccaacttgctgagtcaatcgac
tcacggtatgaaacagcgtacaaaaacggggaaacagcaacacgaaaagaatgtcaggca
ctacacgcggcaacatttctcaatgcatggatgacagatagtgatacagtcggcacccat
ccgctaatctcagttcgacgcgatgagacaacaaatgaggtatatgcccgcgcagagctg
tacacatgcattccacgagctgttactgcagatctatttgatgaagttcatgcgagcatt
ttgatgtcggccacattacgcccattcgacgtcgctgaggatgtacttgggttatcaaat
ccggttcaaatggcatatgaactagcatacccagcggagaaccgtcgaacactcgcagtt
aaaacaccagcactgtttagctcggcacggaatgatcctgatacacaatcgattatcgct
gacacgcttgcggatgctgcacgcttcacgcctggaaatgcattatttttctttccatcg
tatgcagaagccgaacgttatgcaacgcagcttagacagcacgatgctgtctcaaagccg
gtgatgcttgatgaatcaggtactgaaacagaaccgctccggcaatcatttgttgatcag
aacggatgcgtgctttgcacctcattatgggggacacttgcagagggtgtgagttttgat
gatgatgatgcacggactgttgctgtcgttggagtcccgtatccgcatctttctgaacga
gctgaggcagtccaaagcgcatatgatcgagcgtatagtgggcgtaaagatgccggatgg
cgatatgggattgaaatcccgacaatccgaaaaacacggcaagcacttggtcgtgttatt
cgctcaccatcagattatggagtgcgtctgctgattgataagcgatatacacaggaaggt
gctgagatgggaaagtatggtgtccgagatcaattcccacctgaagagcgtgcagagttg
attgatgttgagccatcaaaagtacagttttcgttattaaacttttatgatgatcttgat
gcgtatgatgaaacagtaccatctccatctccttag
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integrated database retrieval system
