Helicobacter winghamensis: A0Z60_01460
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Entry
A0Z60_01460 CDS
T07030
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hwi
Helicobacter winghamensis
Pathway
hwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A0Z60_01460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hwi03019
]
A0Z60_01460
Messenger RNA biogenesis [BR:
hwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A0Z60_01460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_6
DUF4755
Motif
Other DBs
NCBI-ProteinID:
QOQ98286
LinkDB
All DBs
Position
complement(282584..284593)
Genome browser
AA seq
669 aa
AA seq
DB search
MEEQTNPNIQPNKENREPNKRRFRPRKDRMESQKTDSTKEGESGQKPQNRNRYNPRFKKD
TDKNNTNTRENRPKQYNKNFASSTTQASNLELRKAVELNAKIHEDALAPHSKIEFNPNAK
VRITPIGGLGEIGGNMTIIETQNSAIIIDAGMSFPDESMHGVDILVPDFSYLEVIKDKIV
GIIITHAHEDHIGAMPYLFKKYQFPIYGTALPLGLIGSKFDEHGLKKFRSLFRAVEKRKP
MRIGEFEIEWIHITHSIVDSSALAIKTEAGLIFHTGDFKIDHTPIDGYPTDLNRIAHYGE
QGVLLLLSDSTNSHKPGYTPSEASVGPAFDLLFSRAKGRVIMSTFSSNIHRVYQAIQHGI
KYNRKVAVIGRSMEKNLEIARTLGYIELPQNIFIEAHEVAKYGDEEVLIVTTGSQGETMS
ALYRMATDEHRHIKIKPTDTIILSAKAIPGNEGSVSNILNFLNKAGAKVYYQDFSEIHTS
GHAAQEEQKLMLRLVKPKFFLPVHGEYNHILKHKETAISCGVDERNIYLMEDGDQMEIAH
NYLRKVRSVKTGKTYIDNQVNTAIANDVILERQDLAENGILIISVDFNKEKNSIIGKPRI
QTMGIIANKETQAFNKEIEEFFTLFSKNCKKELYNSQKAMENELRNALRKLMFKKTKKYP
TIFPMVTLI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaagaacaaactaacccaaacatacaaccaaacaaagaaaatcgcgaaccaaacaag
cgtcgtttcagaccacgcaaagacagaatggaatcacaaaagacagattccacaaaagaa
ggcgaaagcgggcaaaagccacaaaatcgtaaccgctataatccgcgtttcaaaaaagat
acagataaaaacaacacaaatacgcgtgaaaatcgcccaaagcaatacaataaaaacttt
gcaagctcaactacacaggcttctaaccttgagcttagaaaagccgtagagcttaatgca
aaaatccacgaagacgcgcttgctccgcactctaagattgagtttaaccccaatgcaaag
gtgcgtatcacgccaattggtggcttaggggaaattggcggtaatatgactattattgaa
acacaaaactccgcaatcatcattgatgcaggaatgagcttcccagatgagagtatgcac
ggcgtggatattttagtgccagattttagctatttagaagtgattaaagataagattgtg
ggcattattatcacgcacgcccacgaagatcatatcggtgcaatgccctatttgtttaaa
aaataccaattcccaatctatggcacagctttgcctctaggacttataggctctaaattt
gatgaacacggacttaaaaaatttcgctccctattccgcgcagtagaaaagcgcaagcct
atgagaattggcgagtttgaaattgaatggattcacatcacacattctattgtggattct
agtgctttagcgattaaaacagaagcggggctgattttccacacaggtgattttaaaatc
gaccacacaccaattgatggctatcctactgacttaaatagaattgcgcattatggcgaa
caaggcgttttattgcttcttagtgattctacaaactctcataaacccggttacactcca
agtgaagcaagcgttggaccagcttttgatttacttttttcacgcgctaagggacgcgta
attatgagcacctttagctctaatattcaccgcgtgtatcaggcgatccaacacggcatt
aaatataatcgcaaagtcgcggttattgggcgttcaatggaaaaaaacctagaaattgct
agaactttaggctatattgagcttccacaaaatatttttattgaagcgcacgaagtggca
aaatatggagatgaagaggtgttaattgttaccacaggctcacaaggggaaacaatgagt
gctctctatcgtatggcgacagatgaacatcgccacattaaaattaaaccaactgatacc
ataatcctttcagcaaaagcaattccgggcaatgaaggttctgtgtctaacattttaaac
ttcttaaacaaagcaggggcaaaagtatattaccaagactttagtgaaattcacacaagc
ggacacgccgctcaagaggagcaaaagctaatgcttcgccttgtgaagcctaaatttttc
ttgccagttcacggagaatacaatcatatcttaaaacacaaagaaacagcgatttcttgt
ggtgttgatgaacgcaatatttatctaatggaagatggcgatcaaatggaaattgcacat
aactatttacgcaaagtaagaagtgtaaaaacaggcaaaacttatatcgacaatcaagtc
aatactgcgattgccaatgatgtgattttagagcgacaagacttagcagaaaatggaatc
ttaattatttctgtagattttaacaaagaaaaaaattctataattggcaaaccacgcatc
caaacaatgggaattattgcaaacaaagaaacacaagcttttaacaaagaaattgaagag
tttttcacactctttagtaaaaattgtaaaaaagagctttataacagccaaaaagcaatg
gaaaatgaattaagaaatgccctaagaaaactaatgtttaaaaagactaaaaaatacccc
acaattttcccaatggtaacactcatttag
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