Helicobacter winghamensis: A0Z60_04965
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Entry
A0Z60_04965 CDS
T07030
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
hwi
Helicobacter winghamensis
Pathway
hwi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hwi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0Z60_04965 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hwi03400
]
A0Z60_04965 (uvrA)
DNA repair and recombination proteins [BR:
hwi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A0Z60_04965 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A0Z60_04965 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
UvrA_DNA-bind
SMC_N
AAA_29
nSTAND1
nSTAND3
AAA_21
AAA_16
RsgA_GTPase
AAA_25
DnaJ_CXXCXGXG
APS_kinase
AAA_33
AAA_23
Viral_helicase1
DO-GTPase2
DUF2604
Motif
Other DBs
NCBI-ProteinID:
QOQ97424
LinkDB
All DBs
Position
989344..992175
Genome browser
AA seq
943 aa
AA seq
DB search
MNSKDSPLDNIIITNAKENNLKNINLSIPKNKLVVLTGLSGSGKSTLAFDTLYAEGQRRY
IESLSSYARQFLDKIGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYFRLLFA
RIGMQHCHLCGKPISQMHASDIISEVLKIKEDSKILILSPIIREKKGSFQEKLESLRQKG
YVRAQINGVLVRLDEEINLTKTKKHTIKVVIDRVVVKANNKERIAQAIEKALKESYGEVE
IEILNDDKEKPTLVHFSEHLACFDCKVSFTPLEPLSFSFNSPKGACPKCDGLGIRYTIDT
KKIIDKSLPLAEGGIKIFYGFNKSYYNELFRAFCLANSINPKTSFEDLEEYQQKLILYGN
SDEVEFSWKNTKLKRPFAGVIAIAYDMFKDNKDLGDYMSEKTCEACNGHRLLPQSLAVKV
SSKNIGNLLDLPIEECYGFFANTKNFAHLNTQEKMIAEPILKEICERLYFLYDVGLGYLS
LGRDARSISGGESQRIRIASQIGSGLTGVMYVLDEPSIGLHERDTLKLIKTLRSLQQKGN
SVIVVEHDKETIEHADFIVDIGPGAGKFGGEVVFSGNLTQLLKSKTQTAQYLNGEKKIEY
FMRRKQDSWIEICNVNINNIHNLSVQLPLRNFVCITGVSGSGKSSLILQTLLPVAQELLN
NSKKVKKVDGVEIIGLEKLDKVIYLDQSPIGRTPRSNPATYTGAMDEIRNIFAQTKEAQI
RNYGISRFSFNVKGGRCEKCMGEGEIKIEMHFLPDILVKCDACNGTRYNAQTLEVVYKGK
NIAEVLALSVDEACEFFAKIPKIYQKLKTLQDVGLGYITLGQNAITLSGGEAQRIKLAKE
LSRKDTGKTLYILDEPTTGLHFADVDRLVRVLHHLTDLGNSVIVIEHNLDMIKNADFIID
IGPEGGNNGGLVVDSGTPERIAKRYKKTGSHTGKFLAKELGIH
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
ttgaattctaaggattctccactagataacatcatcatcacaaatgccaaagaaaacaat
cttaaaaatattaatcttagcattcctaaaaacaagcttgttgtgctaacagggcttagt
ggaagcggtaaaagcacactagcctttgatacactctatgcagaagggcaacgcagatat
atagaatcgctctcaagctatgcaaggcagtttttagataaaattggcaagcctgatgtg
gataaaattgaagggctaactccagctattgccattgatcaaaaaacaacaagcaaaaac
cctcgctcaaccgttggcacaatcacagaaatttacgattattttcgcttgctttttgct
cgcattggtatgcaacattgtcatttatgcggtaagcctatctcacaaatgcacgcaagt
gatattatttctgaagtgttaaaaatcaaagaagattctaagattctaatcctatccccc
attatccgcgaaaaaaagggaagctttcaagaaaagttggaatccttacgccaaaaaggc
tatgttagagcgcaaattaatggcgttttagtgcgattagatgaagaaatcaatcttaca
aagacaaaaaagcacaccattaaagttgtaattgatcgcgttgtggttaaggctaataat
aaagaaagaatcgctcaagccattgaaaaagcgctcaaagaatcctatggtgaagtagaa
attgaaattttaaacgacgataaagaaaagcctacacttgtgcattttagcgaacattta
gcttgctttgattgtaaagtttctttcactcccttagaaccccttagcttttcgtttaac
tccccaaaaggtgcttgcccaaaatgcgatggcttaggaatccgctacaccattgatacc
aaaaaaattattgataaaagcctacccctagcagaaggtggaatcaaaattttttatggc
ttcaataaaagctactataacgagctttttcgcgctttctgccttgcaaattctatcaat
cccaaaacaagttttgaagatttagaagaataccaacaaaagttaattctttatggaaat
agcgatgaagtagaatttagctggaaaaatacaaagcttaaacgcccttttgcaggcgtg
attgctattgcttatgatatgtttaaagacaataaagacttaggcgattatatgagtgaa
aaaacttgtgaagcctgcaatggacaccgcttacttccacaaagtctagccgttaaagtc
tctagtaaaaatatcggaaatttactagatttgcccattgaagaatgctatggatttttt
gcaaacactaaaaacttcgcacatttaaacacacaagaaaaaatgattgccgagccgatt
ttaaaagagatttgcgagcgtttatacttcctttatgatgtgggcttagggtatttaagt
ctagggcgtgatgcaagaagtattagcggtggggaatcccagcgcattagaatcgcaagt
caaataggtagcggacttacaggggtaatgtatgtgttagatgaacctagcattggactt
cacgaaagagatacgctaaagctcattaaaacgctaagaagcttgcagcaaaagggtaac
tctgtaattgttgtagaacacgataaagaaaccattgaacacgcggattttatcgtagat
attggacccggagctgggaagtttggcggagaagttgtttttagtggaaatctcacacaa
cttttaaagagtaaaacccaaaccgcacaatatttaaatggagaaaaaaagattgaatac
tttatgcgcagaaagcaagattcttggattgaaatttgcaatgtcaatattaataatatc
cataatctaagcgtgcaacttcctttgagaaattttgtttgtatcacaggcgttagcgga
agtggcaaaagctctttaatcttacaaaccttgcttccagtagcacaagaactactaaac
aatagcaaaaaggttaaaaaagttgatggtgtggaaatcatcggcttagaaaagcttgat
aaagtgatttatcttgaccaaagcccaataggacgcactccgcgctcaaacccagcaact
tacacaggtgcaatggacgaaattagaaatatttttgcacaaaccaaagaagcgcaaatt
agaaactatggaatcagtcgctttagttttaatgttaaaggtgggcgttgcgaaaagtgt
atgggagaaggtgagataaaaattgaaatgcactttttgccagatattttagtcaaatgt
gatgcgtgtaatggcacgcgctataacgcacaaacactagaagttgtttataagggcaaa
aatatcgccgaagtgcttgctttaagcgttgatgaagcttgtgagttttttgccaagatt
ccaaaaatttaccaaaagctaaaaactctccaagatgtagggctaggctatatcacacta
gggcaaaatgccattactctaagtggcggagaagcccaaagaatcaagcttgccaaagaa
ttaagtcgcaaagatacaggcaaaacgctctatatcttagatgaacccaccacaggcttg
cattttgctgatgtagataggcttgtgcgcgtgttgcaccatttaacagatttaggcaat
agcgtgattgtgattgaacacaatttagatatgataaaaaatgctgattttatcatagat
attggaccagaaggtggaaataatgggggcttagtcgtagatagtggcacgccagagaga
attgctaaaagatacaaaaaaacaggcagccacacaggtaaattcctagcaaaagagtta
ggaatccattaa
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