Hwangdonia lutea: RNZ46_02975
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Entry
RNZ46_02975 CDS
T09455
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hws
Hwangdonia lutea
Pathway
hws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RNZ46_02975 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hws03021
]
RNZ46_02975 (rho)
03019 Messenger RNA biogenesis [BR:
hws03019
]
RNZ46_02975 (rho)
Transcription machinery [BR:
hws03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RNZ46_02975 (rho)
Messenger RNA biogenesis [BR:
hws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RNZ46_02975 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA
AAA_22
Ndc1_Nup
Motif
Other DBs
NCBI-ProteinID:
WOD44233
UniProt:
A0AA97HRU5
LinkDB
All DBs
Position
706124..707764
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AA seq
546 aa
AA seq
DB search
MFEISQLKEKKLTDLQEIAKKLNVPKYRSLKKLDLVYQILDQQAADPKAVTAAIEPKQTS
EAATDKKPEPRKPRQRIQKPAKNEPAKREDKQNKESKTTEAKSTEVTPDKKEERKPAHKP
NPRPSNDNKKDNQQKSNQKKDSNQQHKNQHKNQKNGNIDKGNKDSRNRYREPDFEFDAII
ESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDTVLGHVRPPKEGEK
YFPLIKVSKINGQNPNVVRDRVSFEHLTPLFPQEKFNIAEKQSTISTRIMDLFAPIGKGQ
RGMIVSQPKTGKTMLLKDVANAIAANHPEVYQMILLIDERPEEVTDMQRNVRGEVIASTF
DKEAHEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKILSGGVDAN
ALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEFKGTGNMELQLDRKISNR
RIFPAIDLTSSSTRRDDILLDDNTIQRMWVMRKYLADMNPVEAMEFINERFKQTRNNEEF
LISMNG
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcacaattaaaagaaaagaaactcactgatttacaggagattgctaaa
aaattgaacgtcccaaaataccgttctctaaaaaaattagatttagtttaccaaatactg
gaccaacaagcggccgacccaaaagcagtaaccgcagccatagagcccaaacagacttca
gaggctgccaccgataaaaaaccagaaccaagaaaacccagacagcgtatacaaaagccc
gctaaaaacgagccagcgaaacgcgaagacaaacaaaataaagaaagcaaaacaactgaa
gcaaaatctacagaggttactccagataaaaaagaagaaagaaaaccagcgcacaaaccc
aatcccagaccatctaacgataataaaaaggataaccagcaaaaaagcaatcagaaaaaa
gatagcaaccaacaacataaaaatcagcataaaaaccagaaaaacggtaatattgataaa
ggcaacaaggatagcagaaaccgttatcgggagccagatttcgaatttgatgcgattatt
gaaagtgaaggcgttttagatatcatgcaagatggttacggttttttacgctcatcagat
tacaactatttatcttcaccagacgatatatatgtatcgcaatcgcaaatccgtttattc
ggtttaaaaaccggagataccgttttagggcatgtacgtccgccaaaagaaggcgaaaaa
tactttccgttaatcaaagtcagtaaaattaacgggcagaacccaaatgttgttagagac
cgcgtgtctttcgagcatttaacaccgttatttccacaggaaaaatttaatatagccgaa
aaacaaagtaccatttcaacacgcatcatggacttgtttgcacccattggcaaagggcaa
cgtggtatgattgtatcgcaaccaaaaacaggtaaaaccatgttattaaaagacgtggcg
aatgctattgcggcaaatcatccggaagtgtaccaaatgattttattgattgatgagcgc
ccagaagaagttaccgatatgcaacgtaatgtacgtggcgaggtgattgcttcaaccttt
gataaggaagcgcacgaacacgtaaaaattgcaaacatcgttttagaaaaagcaaaacga
ttggttgaatgcgggcacgatgtggtgattctattagattccattacacgtttggcgcga
gcatacaataccgtgcaaccagcctctggaaaaatactaagtggtggtgttgatgccaac
gcactacacaaaccaaaacgcttttttggtgcagcacgtaatattgaaaacggcggctcg
ttaaccattatcgcaacagcgcttaccgaaacaggctctaaaatggacgaggtaatcttc
gaagaattcaagggcaccggtaatatggagctgcaattggatagaaaaatatctaaccgc
agaattttccctgctatcgatttaacatcgtcaagcactcgtcgcgatgatattctattg
gacgacaacaccattcaacgtatgtgggtcatgcgcaaatatcttgcagacatgaaccct
gttgaagccatggaatttattaacgagcgtttcaaacaaactagaaacaacgaggagttc
ttgatttcgatgaacggataa
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