Hwangdonia lutea: RNZ46_03080
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Entry
RNZ46_03080 CDS
T09455
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hws
Hwangdonia lutea
Pathway
hws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RNZ46_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hws03019
]
RNZ46_03080
03009 Ribosome biogenesis [BR:
hws03009
]
RNZ46_03080
Enzymes [BR:
hws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RNZ46_03080
Messenger RNA biogenesis [BR:
hws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RNZ46_03080
Ribosome biogenesis [BR:
hws03009
]
Prokaryotic type
rRNA helicases
RNZ46_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
WOD44251
UniProt:
A0AA97HQS2
LinkDB
All DBs
Position
729777..731594
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AA seq
605 aa
AA seq
DB search
MSTFQDLGLNDHLLQAITDLGFTKPSEVQEKAIPILLESETDLVALAQTGTGKTAAFGFP
MLEKINIDSRTTQGLILSPTRELCLQITNEMKQYGKYCKGLNVVAIYGGSSITDQAREVK
RGAQIIVATPGRMKDMIKRRLVDISKIEYAVLDEADEMLNMGFYEDITDILSHTPEDKST
WLFSATMPKEVATIAKKFMKSPKEITVGNKNESTNQVSHEYYLVNARDRYQALKRLSDAN
PDIFSVVFCRTKRDTQKVAEKLIEDGYSAGALHGDLSQNQRDLVMKSFRNKQIQTLVATD
VAARGIDVDDITHVINYQLPDEPEVYTHRSGRTGRAGKTGVSMVIVSKSEVRKIKGIERI
IKKQFEKKEIPDGAEICEVQLMSLANKIHNTEINHEIDKHLTSINDLFVDTDKDELIKKF
FSVEFTRFYNYYNKSKNLNIAEGSFDQDSGRSFGGSKNTTRYFINVGKKDGYDWMKLKDF
LKEVLVLGRDDVFKVEVKDSFSFFNTENEQKEKVLAFFTDYKHDGRFVNVEVSENRGGGG
RRNDRRSGGRKRDERRSGGRREGRRSDSGNRSERRRSENNSKPRRSDSGSKSNDFAASRP
RRSRR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagatttaggtcttaatgaccacttattacaagctattacagattta
gggtttacaaaacccagtgaagtacaagaaaaagcaatccctattttattagaatcagaa
accgatttagtggcattggcccaaaccggaaccggtaaaacggcagcgtttggttttccg
atgttggaaaaaattaatattgatagccgaacgacccaagggttgattttaagccctaca
cgcgaactttgtttgcaaattaccaacgaaatgaagcaatacggcaagtattgcaaagga
ctaaatgtagtggccatttatggtggttcgagcattacagaccaagcccgagaggtaaaa
cgcggtgcgcaaattattgtggctacgccagggcgaatgaaggatatgattaaaaggcgt
ttggttgatattagcaaaattgaatatgcggttttagacgaggccgacgagatgctaaac
atgggcttttatgaggatattaccgatattttatcgcatacgcctgaggataaaagtacg
tggttgttttcggcaacaatgccaaaggaagtggctaccattgctaaaaaattcatgaag
agtccgaaggaaatcacggtgggaaacaaaaacgaaagtacaaaccaagtttcgcacgaa
tactatttggtgaatgccagagacagataccaagcgctaaagcgcttatcggatgccaat
ccagatatattttcggtggtgttttgccgtacaaaacgcgacacccaaaaagtggccgaa
aaactgattgaagatggttatagcgctggggccttgcatggcgatttaagccaaaatcaa
cgtgatttggttatgaaatcgtttcgaaacaaacaaatacaaacccttgtggcaaccgat
gtggccgctcgtggtattgatgtagacgatattacacacgttataaattaccaattacca
gatgagcccgaagtttacacacaccgttcgggtagaacaggtcgcgccggaaaaaccgga
gtttctatggttattgtttccaaaagcgaagtgcgtaaaattaaaggtatcgagcgtatt
attaaaaagcaattcgagaaaaaggaaattccagatggcgcagaaatttgcgaagtgcaa
cttatgtcgctcgccaataaaattcacaatactgaaatcaatcacgaaatcgataaacat
ttaaccagtattaacgatttatttgttgataccgataaagatgaattgattaaaaaattc
ttctcagttgagtttacgcgtttttacaattactacaacaaatccaaaaatcttaatatt
gctgaaggttcgtttgatcaagatagcgggcgcagttttggtggaagtaaaaacactacc
cgatactttataaacgttggtaaaaaagacggttatgattggatgaagctaaaagacttt
ttaaaagaagttttggtgcttggtagagatgatgtttttaaagttgaagtaaaggacagc
ttctcgttttttaataccgagaatgagcaaaaagaaaaagttttggctttctttacagac
tacaaacatgatggtcgttttgtaaatgttgaagtatctgaaaaccgcggtggcggcgga
aggcgcaacgacagacgcagtggcggaagaaaacgcgatgaacgaagaagcggcggaaga
cgtgaaggcagaagaagtgattctggaaaccgaagcgaaagacgacgcagtgaaaacaac
tcgaaaccaagacgatcagattccggctcaaaatccaacgattttgcggcttcaagacca
agacgttccagacgttag
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