Hwangdonia lutea: RNZ46_11200
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Entry
RNZ46_11200 CDS
T09455
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hws
Hwangdonia lutea
Pathway
hws03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hws00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RNZ46_11200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hws03021
]
RNZ46_11200 (rpoC)
03400 DNA repair and recombination proteins [BR:
hws03400
]
RNZ46_11200 (rpoC)
Enzymes [BR:
hws01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RNZ46_11200 (rpoC)
Transcription machinery [BR:
hws03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RNZ46_11200 (rpoC)
DNA repair and recombination proteins [BR:
hws03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RNZ46_11200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF4825
DUF4464
Motif
Other DBs
NCBI-ProteinID:
WOD42554
UniProt:
A0AA97EJF4
LinkDB
All DBs
Position
2554790..2559091
Genome browser
AA seq
1433 aa
AA seq
DB search
MARKQDKHTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGNAKNEEGEPLQKLDFLTEEEYLNILETLPQDNQY
LDDDDPNKFLAKMGAECLIELLSRIDLQALSYELRHKANTETSKQRKTEALKRLQVVEAL
RESNNNRENRPEWMIMKVVPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELRLFECGIPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILECQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKLRKSTPEM
PIKGEGLTFYSPEEVVIAFNEKRVDLNAGIKVRTIDLNEDGKLDKMIVDTTVGRVLFNQH
VPQAAGYINQVLTKKSLRDIIGKILKVTSVPETADFLDAIRTLGFKFAFQGGLSFSLGDI
IIPPEKQGMIDKANGLVDGITGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVEPLKKND
EIVETLEERIVGRVSLNDVYNPLTDDLLVSAGELIDDDIARAIEASPIDAVEVRSALSCE
ALKGICAKCYGRNLATGKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LVVKFNGVAEIEDLKTVKGQDAEGNEVDIVISRTSELKLTDKKTGIVLSTNNIPYGSTIY
VKNGQELSKGDVVCQWDPYNGVIISEFAGKVKYENIEQGVTYQVEIDEQTGFQEKVISES
RNKKLIPTLHIEDGKGEIIRSYNLPVGAHLMIDDGEKIIIGKVLVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSAIDGVVSFGKIKRGNREIIVESKSGDIKKYLVKLSNQILV
QENDYVKAGMPLSDGSITPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTIFLEDQLAHKADFIKENDEIFGMKVIEDAGDSTNLKAGQIISPREL
RDENSILRREDKNLVVARDAQPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDTLEGLKENVIVGHRIPAGTGMRNYSDIIVGSKEEFDEMMQVKKELNYN
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaaacaagataaacatacagtaaagagatttaataaaatctcaattggttta
gcatcaccagaatctattttagcagaatctagaggcgaggttttaaaaccagaaactatt
aattatcgaacgcacaaaccagaacgtgatggtttgttctgtgagcgtatttttggccct
gtaaaggattacgaatgtgcttgtggtaaatataaaagaatccgttacaaaggtattgtt
tgcgaccgttgtggcgtagaagtaacagaaaagaaagtacgtagagatcgcgtaggacac
atcaaccttgttgtgcctgttgcgcatatttggtatttccgttcgttaccaaacaaaata
gggtatttattaggcttaccatctaagaaattagatatgattatttactacgaacgttat
gtagtaattcaaccaggtaatgctaaaaatgaagaaggagaacctttgcaaaaattggat
ttccttacagaagaagaatacctaaatattttagaaacacttcctcaagataatcaatat
ttagacgacgacgaccccaataagtttttagctaaaatgggtgcggagtgtttaattgaa
ttattatcaagaatagatttacaagcgctgtcttacgaattgcgtcataaagccaataca
gaaacgtctaaacaacgtaaaactgaagctttaaaacgtttacaagtggttgaggcttta
cgtgaatctaacaataacagagaaaatcgtccggaatggatgattatgaaggttgtgcca
atcattccgccagaattacgtcctttagtgccgttagatggtggtcgtttcgcaacatca
gatttaaatgatttataccgtcgtgttattatccgtaacaaccgtcttaaaagattggtt
gagataaaagcgccagaggtgattttacgtaacgaaaaacgtatgttacaagaatctgtg
gattcattatttgataacacgcgtaaatcgtctgcagtaaaaacagattctaaccgacca
ttaaaatcgttatccgattcacttaaaggtaagcaagggcgtttccgtcaaaacttattg
ggtaagcgtgttgattattcggcgcgttcggtaattgttgttggaccggaattaaggttg
ttcgaatgtggtattccaaaaaatatggcggccgaattatacaaacctttcgttattaga
aaattaattgaaagaggtattgtaaaaaccgtaaaatctgcaaagaaaattatagataaa
agagaacctgtagtttgggatattttagaaaatgttttaaaaggacatccagtactttta
aatcgtgctcctaccttacacaggctcggtatacaagcattccaacccaaattaattgag
gggaaagccatacaattgcacccattggtgtgtacggcgtttaatgccgattttgatggt
gatcaaatggcggtgcatttaccacttgggccagaagctattttagagtgccagttatta
atgttggcatcgcacaatatcttaaacccagcaaatggttcgccagtaacggtgccttct
caagatatggtacttggactgtattatatgactaaactgcgtaagtctacaccagaaatg
ccaattaaaggtgaaggcttaactttttattctccagaagaagtggttatagcttttaac
gagaaaagagtggatttaaatgcaggtattaaagtaagaacaatcgatcttaatgaagat
ggcaaacttgataaaatgattgttgataccacggttggtcgtgtgttgtttaatcaacac
gtaccacaagctgctggatacatcaatcaagtattgactaaaaaatcgttaagggatatt
atcggaaaaattcttaaagtaacttcagttcctgaaactgctgatttcttggatgcgatt
agaactttagggttcaaatttgcattccagggcggattgtcgtttagtttaggtgatatt
atcattccgccggaaaagcaaggcatgattgataaagccaatggtttagtagacggtatt
accggtaactataacatgggacttattaccaataacgagcgttacaaccaagttattgat
atttggacctctacaaatgcggaattgaccgagttgtcaatgaaacgtattcgtgaagac
caacaaggattcaactcggtatatatgatgcttgattctggagctcgtggttctaaagaa
caaattcgccagcttacaggaatgcgtggattaatggcaaaacctaaaaaatcgaatgca
ggtggcggcgagattatcgaaaacccgattctttctaactttaaagaaggactttcaatt
ttagaatactttatctctacacacggtgcacgtaaaggtcttgcagatacggctcttaaa
acggccgatgcgggttacttaacacgtcgtttggtagatgtttcacaagatgttattatc
aatacagaagattgtggaaccttaagaggtgttgaagttgagccattaaagaagaatgac
gagattgttgagactttagaagaaagaatagttggacgtgtatcgttaaacgatgtatat
aatccgttaacagatgatttactggtttctgccggagaacttattgatgacgatatagca
agagctatagaagcctcaccaatcgatgctgtcgaagtacgttcagcattaagctgtgaa
gccttaaaaggtatttgtgccaaatgttacggtcgtaatttagccacaggtaaaatggta
caacgtggcgaagctgttggtgttgttgcggcacaatctattggagaacctggaactcag
ttaacattgcgtacattccacgtaggtggtattgcaggtaacatttcagaggataacaaa
ttggttgttaagtttaatggtgttgctgaaattgaagatttaaaaaccgttaaaggtcaa
gatgcagaaggcaacgaagtagatatcgttatttcgcgtacatctgagcttaaattaacc
gataagaaaacgggtattgttttaagtaccaacaacataccttatggttctaccatttat
gttaaaaatggccaagaattgagcaaaggtgatgtggtttgtcagtgggatccatataac
ggtgtaattatttcagaatttgctggtaaagtaaaatatgaaaacatcgagcaaggggta
acttatcaagttgaaattgatgaacaaactggtttccaagaaaaagtaatttctgaatct
agaaacaagaagttaataccaacactgcatattgaagatggtaaaggcgaaattattcgt
tcttataacttacctgttggagcacacttaatgattgacgacggagagaaaattattatc
ggtaaggtattggttaaaattcctcgtaaatctgcaaaagcaggagatattacaggaggt
ttaccacgtgtaaccgagttgttcgaagcacgtaacccttcaaacccagcagtagttagt
gctattgatggagtagtgtcttttggtaaaattaagcgtggtaatcgtgagattattgta
gaatctaaatcaggcgatatcaagaagtacctagtaaaattatctaatcaaattctagta
caggaaaacgattatgtaaaagcgggtatgcctttatcggatggttctattactccaaac
gatattttaaatattaaagggccatcggctgtacaacagtacttagtgaacgaagtacag
gaagtatatcgtttacaaggtgtgaaaattaacgataagcacttcgaggttgttgttcgt
caaatgatgcgtaaagtacgtattattgattctggcgatactattttcttagaagatcaa
ttggctcataaagcagatttcattaaagaaaacgatgaaattttcggaatgaaagtaatt
gaagacgcaggggattcaacaaatctaaaagcgggacaaattatttcgcctcgcgaatta
agagatgaaaactcaattttgcgtcgagaagataaaaatcttgtagttgcaagagatgcg
cagccagcaacggcaacgccaatattgcaaggtattacaagagcatcgcttcaaactaaa
tcatttatttctgcggcatccttccaagaaaccacaaaggttcttaacgaagcagctgta
gcaggtaaagttgatactttagaaggacttaaggaaaatgtaattgttggacatagaatt
ccagcaggtacaggtatgcgaaactattcggatatcattgtaggttctaaagaagaattt
gacgaaatgatgcaagtaaaaaaagagttaaattataactaa
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