Hwangdonia lutea: RNZ46_11315
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Entry
RNZ46_11315 CDS
T09455
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hws
Hwangdonia lutea
Pathway
hws03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hws00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RNZ46_11315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hws03019
]
RNZ46_11315
Enzymes [BR:
hws01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RNZ46_11315
Messenger RNA biogenesis [BR:
hws03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RNZ46_11315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
SUa-2TM
AAA_19
MTS_N
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WOD42577
UniProt:
A0AA97EK50
LinkDB
All DBs
Position
complement(2582342..2583583)
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AA seq
413 aa
AA seq
DB search
MSFKDLQLNKPLLRAIAEAGYDNPTLVQERTIPLVLDKKDVITSAQTGTGKTAAFALPIL
QLLFDKQDAPKKGKKIKALIVSPTRELAIQINDNFKLYGKNTNLRTTVIYGGTSIEPQKD
VLKKGVDILIATPGRLLDLHKQDIINLDYVETLVLDEADLMLDMGFIDDVKKIERLCPDE
KQILLFSATMPYKVEQLANTILKSPERIEVTPTSSAAKNVSQVLYYVPKRNKIELCLHLL
RNTIKGNILIFRRTKFGVDKLEQTLTKNGYKVETIHGDKAQNLRQEALKKFKNGYVNILI
ATDVAARGIDINELDAVVNFDMPNVPETYVHRIGRTGRAGQTGMSYSLCSADEKSYVQKI
QQLINVQIPIEENHPYPLDPKAKPIIHKSKKTGSKHKKGRKSAASKKKKKRWY
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaagatttacaacttaacaaaccgcttttaagagccattgccgaggccgga
tacgacaaccccaccttagtacaagaacgtaccattccgcttgttttagataaaaaagat
gtgattacctcggcacaaaccggcaccgggaaaacggccgcatttgcgttacccattttg
caattattgtttgataaacaagatgcacccaaaaaaggaaaaaagattaaagcgcttatt
gtgagtcccacacgcgagttagccattcaaattaatgacaattttaagctttatggcaaa
aacaccaatttacgcactacggtaatttatggcggcacgtctatcgagccccaaaaggat
gtattaaaaaaaggcgttgacatacttattgctaccccagggcgattactcgatttgcat
aaacaggatattattaatttggattacgttgaaactttggttttggatgaagccgacctc
atgctcgatatgggctttattgatgatgttaaaaagattgagcgtttgtgccccgatgaa
aaacaaatattgttgttttcggcaacaatgccctataaagtcgaacagcttgccaatacc
attttaaaatcgcccgagcgcattgaagttaccccaacatcatcggccgcaaaaaatgtg
agtcaggtgttgtattatgtgccaaaacgcaataaaattgagctgtgtttacacttatta
cgaaacactataaaaggcaatattttaatttttagacgaaccaaatttggcgttgataaa
ttagaacaaacccttacaaaaaatggctataaagttgaaaccattcatggcgataaagct
caaaatttaagacaagaggctttaaaaaagtttaaaaatggctatgtaaatattttaata
gcaaccgatgttgcggcacgtggcattgatatcaatgaattggatgccgttgtaaatttt
gatatgccaaatgtacccgaaacttatgtgcacagaattggacgtacgggtcgtgccgga
caaacgggcatgtcctattcattgtgttctgctgatgaaaaaagctatgtgcaaaaaatt
cagcagttaataaatgttcaaattcctattgaagaaaatcatccatatcctttagatcca
aaagcgaaacctattattcataaatctaaaaaaacaggaagcaaacataaaaaaggacgt
aaaagtgcagcttcgaaaaagaaaaagaaacgttggtattag
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