Halopiger xanaduensis: Halxa_0728
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Entry
Halxa_0728 CDS
T01532
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hxa
Halopiger xanaduensis
Pathway
hxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halxa_0728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hxa03019
]
Halxa_0728
Messenger RNA biogenesis [BR:
hxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Halxa_0728
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
AEH35367
UniProt:
F8D6C0
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All DBs
Position
complement(45946..47298)
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AA seq
450 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGDDVVIFDMGLNLSQVLIHDNVETERMHSLDLIDMGA
IPDDRIMSDLEGDVQAIVPTHGHLDHIGAISKLAHRYNAPVVATPFTIELVKQQIEGEQK
FGVENDLIKMDAGETMSIGDSGQVELEFVNVTHSIIDAINPVLHTPEGAVVYGLDKRMDH
TPVIGDPIDMERFREIGREGNGVLAYIEDCTNANKKGRTPSENVAREHLRDVLYSMEDYD
GGIVATTFSSHISRVTSLVEFAKDIGRQPVLLGRSMEKYSGTAERLDFVDFPDDLGMFGH
RKSVDRTFKRIMNEGKENFLPVVTGHQGEPRAMLTRMARGETPYQLDDGDKVVFSARVIP
EPTNEGQRYQAEKLLGMQGARIYDDIHVSGHLCQEGHYEMLDALQPQHVIPAHQDLSGFS
SYVNLCESEGYKMGRDLHVTRNGNLIQLVD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaaccataggcggctacgaagaagtcggacggcagatgactgcc
gtccgcgccggcgacgacgttgtcatcttcgacatgggtctgaacctctcgcaggtcctg
atccacgacaacgtcgaaaccgaacggatgcacagtctcgatctgatcgacatgggagca
atccccgacgatcggatcatgagcgacctcgagggcgacgtgcaggccatcgtgcccacg
cacggccacctcgaccacatcggggccatctcgaagctggcccaccggtacaacgcgccg
gtcgtcgcgacgccgtttacgatcgaactcgtcaaacagcagatcgagggcgagcagaag
ttcggcgtcgagaacgacctcatcaagatggacgccggcgaaacgatgtcgatcggcgac
agcgggcaggtcgaactcgagttcgtcaacgtcacccactcgatcatcgacgcgatcaac
ccggtcctgcacacgcccgagggcgcggtcgtctacgggcttgacaaacgcatggaccac
acgccggtcatcggcgacccgatcgacatggagcggttccgcgagatcggtcgcgagggc
aacggcgtcctcgcctacatcgaggactgtaccaacgcgaacaagaaggggcgcaccccc
tccgagaacgtcgcccgcgagcacctccgggacgtcctctacagcatggaggactacgac
ggcggcatcgtcgcgacgaccttctcgagtcacatctcgcgcgtgacgtcgctggtcgag
ttcgccaaggacatcgggcgccagcccgtcctgctgggccgctcgatggagaagtactcc
ggaaccgccgagcgcctggacttcgtcgacttccccgacgacctggggatgttcggccac
cgcaagtccgtcgaccggacgttcaagcggatcatgaacgagggcaaggagaacttcctg
cccgtcgtcacgggccaccagggcgagccgcgcgcgatgctcactcggatggcccgcggc
gagacgccgtaccagctggacgacggcgacaaggtcgtcttctccgcccgcgtcatcccc
gagccgaccaacgagggccagcgctaccaggccgagaagctgctcggcatgcagggcgcc
cgcatctacgacgacatccacgtctcgggccacctctgccaggagggccactacgagatg
ctagacgccctgcagccccagcacgtcatcccggcccaccaggacctgagcgggttctcg
agctacgtcaacctctgtgagagcgaggggtacaagatggggcgcgacctccacgtcacg
cgcaacggcaacctcatccagctcgtggactga
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