Halopiger xanaduensis: Halxa_1143
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Entry
Halxa_1143 CDS
T01532
Name
(GenBank) tRNA-splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hxa
Halopiger xanaduensis
Brite
KEGG Orthology (KO) [BR:
hxa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hxa03016
]
Halxa_1143
Enzymes [BR:
hxa01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
Halxa_1143
Transfer RNA biogenesis [BR:
hxa03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
Halxa_1143
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GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
AEH35776
UniProt:
F8DAH1
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All DBs
Position
455783..456847
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AA seq
354 aa
AA seq
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MSLEGRFDAEAGLVYVGGDARQRYHDSRGYGYPISSNEIALSPVEAAHLLYRGDLEAVVD
DANGARLDFQSFVAREPGDHFGVRFLVYADLRSRGFYLSPADESWVEDPPTGEADFAVFP
RGKGPGDGEIAYALRIIGERTDVSAAELAEGVLAVVDEESEITYFEVNREEPTGDSNPDV
ALPQGCEADLLADRVVVWDPPLELYERLFYGQPLEGREYDRPTLQCSLLEAAYLAERGAI
DLDPATVRERGREVEGDRFERRLAVYTDLRERDVVPKTGYKFGADFRTYAAVDSVAELDH
SELLVRVHPADYVFEPRDLALDVRLAHGVRKTMVFALVDDDGDVDWWSLERLTP
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgtcactcgaggggcggttcgacgccgaggcgggcctcgtctacgtcggcggcgacgcg
cgacagcgctaccacgactcccgggggtacggctatccgatctcgagcaacgaaatcgcg
ctctcgccggtcgaggcggcccacctgctctaccggggcgacctcgaggcggtcgtcgac
gacgcgaacggggcccgactggacttccagtcgttcgtcgcccgcgaacccggcgaccac
ttcggcgtgcggtttctcgtctacgcggatctgcgctcgcggggcttctacctctcgccg
gccgacgaatcgtgggtcgaggatccgccgaccggcgaggccgacttcgcggtgttcccc
cgcgggaaggggcccggcgacggcgagatcgcctacgcgctgcggatcatcggcgagcgg
accgacgtatcggccgccgaactcgccgagggcgtcctcgcggtcgtcgacgaggagagc
gagatcacctacttcgaagtgaaccgggaggagccgacgggggactcgaaccccgacgtg
gccctcccgcagggctgcgaggccgacctgctcgccgaccgcgtcgtcgtctgggacccg
ccgctggaactctacgagcgactcttctacggccaaccgctcgagggccgggagtacgac
cggccgacgctgcagtgttcgctgcttgaggcggcgtacctcgccgagcggggcgcgatc
gacctggatccggcgacggttcgggagcggggtcgcgaggtcgaaggcgaccggttcgag
cgccggctggccgtctatacggacctgcgcgagcgcgacgtcgttcccaagaccggctac
aagttcggcgcggactttcggacctacgccgcggtcgactccgtcgccgaactggatcac
tccgaactgctggtgcgggtgcatccggccgactacgtcttcgaaccgcgagatctggcg
ctggacgtgcgcctcgcccacggcgtccgcaagacgatggtgttcgcgctcgtcgacgac
gacggcgacgtggactggtggtcgctcgagcggttgacgccctga
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