Halopiger xanaduensis: Halxa_1618
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Entry
Halxa_1618 CDS
T01532
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
hxa
Halopiger xanaduensis
Brite
KEGG Orthology (KO) [BR:
hxa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hxa03019
]
Halxa_1618
Messenger RNA biogenesis [BR:
hxa03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
Halxa_1618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
DEXQc_Suv3
C2H2-2nd_BIRD-IDD
Motif
Other DBs
NCBI-ProteinID:
AEH36250
UniProt:
F8D3Z7
LinkDB
All DBs
Position
complement(930342..932408)
Genome browser
AA seq
688 aa
AA seq
DB search
MSKQVQQVETIFCHETGDDYLIVVQRDGERLFRAKLVLSETSAGPRPAKFRLKQGSSEEP
RQPDEFVELARRAKRIRISEQTSAEKRRELTEMLAGYQLEDKAKAVRTCRYCASAGRYSP
ITTETAVKDDNDWICQDCARQELERQLSFSGGGAVTGAAKERLEDLMLEVQDLERIVNLL
KGQLDPDLTKFDTISATTDEIDPVPVDSLNLHPGLQNLLEDRFETLLPVQSLSVENGLFD
GDDQMVVSATATGKTLVGEMAGINRVLNGKGKMLFLVPLVALANQKYEDFQDEYGHLVDV
SIRVGASRIADNGNQFDPNADVIVGTYEGIDHALRTGKDMGDIGTVVIDEVHTLKEEDRG
HRLDGLISRLKYTCEQRAKRRDDYGGAQWIYLSATVGNPEQLADVLESTLIEFEERPVPI
ERHVTFADGQEKVRIENKLVKREFDTKSSKGYRGQTIIFTNSRRRCHEISRKLEYSSAPY
HAGLDYKRRKKVERQFGEQELSAVVTTAALAAGVDFPASQVVFDSLAMGIEWLSVQEFHQ
MLGRAGRPDYHDKGKVYVLVEPDCAYHNSMEGTEDEIAFKLLKGEMESVMTHYDEAAAVE
ETLANIAVGGKAAKALNDRMLGEVPTKHAIGKLLQYDFIDGFEPTPLGQVITQHFLEPGE
AFTLVDGIRKDAHPYDLVADIELRDDDL
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaagcaggtccagcaggtcgaaacgatcttctgccacgagacgggtgacgattac
ctgatcgtcgtccagcgcgacggcgagcggctgttccgggcgaagctcgtcctctcggag
acgtcggccggtccccgacccgccaagttccgcctcaagcagggctcgagcgaggagccc
cgccagcccgacgagttcgtcgaactcgcccgccgcgccaagcggatccgcatttctgaa
cagacctccgccgagaagcgccgcgagctcaccgagatgctcgcgggctaccagctcgag
gacaaggccaaggccgtccggacctgccggtactgcgcctcggctggccggtactcgccg
atcacgaccgaaaccgccgtcaaggacgacaacgactggatctgtcaggactgcgcgcgt
caggaactcgagcgccaactgtcgttctcgggcggcggtgcggtcaccggcgccgccaaa
gagcgtctcgaggacctcatgctcgaggtgcaggacttagagcggatcgtcaacctgctc
aaggggcaactcgaccccgacctgacgaagttcgatacgatctcggcgacgaccgacgag
atcgatcccgtcccggtcgactccctgaatctccatccgggcctgcagaacctgctcgag
gaccgattcgagacgctgctgcccgtccagagtctctcggtggagaacggcctgttcgac
ggcgacgaccagatggtcgtctccgcgacggcgaccgggaagaccctggtcggcgagatg
gccggcatcaaccgggtcttgaacgggaaggggaagatgctctttctcgtcccgctggtc
gcgcttgccaaccagaagtacgaggacttccaggacgagtacggccacctcgtcgacgtc
tccatccgcgtcggggcgagccggatcgccgacaacggcaaccagttcgacccgaacgcc
gacgtcatcgtcggcacctacgaggggatcgaccacgccctccggaccggcaaggacatg
ggcgacatcgggaccgtcgtcatcgacgaggttcacaccttgaaggaggaagaccgaggc
caccgactcgacggcctcatttcgcggctcaagtacacctgcgagcagcgcgcgaaacgg
cgcgacgactacgggggcgcccagtggatctacctctcggcgaccgtcggcaaccccgaa
cagctcgcggacgtcctcgagtcgacactcatcgagttcgaggagcggccggtgccgatc
gagcgccacgtcaccttcgccgacggccaggagaaggtccgcatcgagaacaaactcgtc
aaacgcgagttcgacaccaagtcctcgaaggggtaccggggccagacgattatcttcacc
aactcccgacgacggtgtcacgagatttcgcgcaagttggagtactcctccgccccgtac
cacgccgggctggactacaaacgccggaagaaggtcgaacgccagttcggcgagcaggag
ctatcggcggtcgtcacgaccgcggcgctcgcagccggggtcgacttccccgcttcgcag
gtcgtcttcgactcgctggcgatgggtatcgagtggctctccgtccaggagttccaccag
atgcttggccgcgcgggccggcccgactaccacgacaaggggaaggtgtacgtcctcgtc
gaacccgactgcgcctaccacaactcgatggaggggaccgaggacgagatcgcgttcaaa
ctgctcaagggcgagatggagtcggtgatgacccactacgacgaggccgccgccgtcgag
gagaccctggccaacatcgcggtcggcggcaaggccgcgaaggcgttgaatgaccgcatg
ctcggcgaagtgccgacgaaacacgccatcggcaagctgctgcagtacgacttcatcgac
ggcttcgaaccgacgccgctcggccaggtcatcacccaacacttcctcgagcccggcgag
gccttcaccctcgtcgacggaattcggaaggacgcccacccctacgacctcgtcgccgac
atcgagcttcgggacgacgatctctga
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