Halopiger xanaduensis: Halxa_3505
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Entry
Halxa_3505 CDS
T01532
Name
(GenBank) Transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hxa
Halopiger xanaduensis
Pathway
hxa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hxa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Halxa_3505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hxa03021
]
Halxa_3505
Transcription machinery [BR:
hxa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
Halxa_3505
Prokaryotic type
Archaeal type
TFB
Halxa_3505
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
A2L_zn_ribbon
Cyclin_N
Zn_Ribbon_YjdM
Zn_ribbon_IS1595
Rcat_RNF216
Sigma70_r4
Ribosomal_S27e
HVO_2753_ZBP
FtrD-like
Trm112p
DUF8106
eIF-6
DUF7573
Motif
Other DBs
NCBI-ProteinID:
AEH38116
UniProt:
F8DAF6
LinkDB
All DBs
Position
2829334..2830305
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AA seq
323 aa
AA seq
DB search
MDRLTRQRTRDSETTQERENEQDTAAERVCPECNSDSLVRSEDQRELVCDDCGLVVEESN
IDRGPEWRAFNHSERQSKSRVGAPTTQAMHDKGLTTQIDWKNTDAYGRSLSADKRSQMRR
LRKWQERIRTKDAGERNLQSALSEIDRMSSALGIPRSVREVASVVYRRALSEDLIRGRSI
EGVATGCLYAACRQEGIPRSLEEVAEVSRVERKEIGRTYRYVAQELSLELKPVDPQEYVP
RFCSELDLSEEVTAKTREIIQVTAEKGLLSGKSPTGYAAAAIYAASLLCNEKKTQREVAE
VAQVTEVTIRNRYQEQIEAMGIH
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggataggctcacccggcagcgaacgcgcgactccgaaacgacacaggaacgcgagaac
gagcaggatacggcggctgaacgggtgtgcccggaatgtaactccgacagcctcgtcagg
agcgaggaccagcgagaactcgtctgcgacgactgcgggctcgtcgtcgaggagtcgaac
atcgatcgcgggccggagtggcgcgcgttcaaccactccgagcgacagagcaagtcccgc
gtcggcgcgccgaccacccaggcgatgcacgacaaggggctgaccacccagatcgactgg
aagaacacggacgcctacggccgctcgctgtcggcggacaagcgcagccagatgcgccgg
ctccgcaagtggcaggaacgcatccgcacgaaagacgccggcgaacggaacctccagtcc
gcgttaagcgagatcgaccgcatgtcgagcgcgctcggcatcccgcgatcggtccgcgag
gtcgccagcgtcgtctaccgacgggcgctctccgaggacctgatccgcggccgctcgatc
gagggcgtcgccaccggctgcctctacgccgcctgccgccaggagggcatcccgcggagt
ctcgaggaggtcgccgaggtatcccgagtcgaacgaaaggagatcgggcgcacgtaccgg
tacgtggcccaggagctgagtctggaactgaagccggtcgatccccaggagtacgtcccg
cggttctgctcggagctcgatctgagcgaggaggtcacggcgaagacgcgagagatcatc
caggtcacggcggagaagggcctgctctccgggaagtcgccgacggggtacgctgccgcc
gcgatctacgccgcgtcgctgctgtgcaacgagaagaagacccagcgcgaggtcgcggag
gtcgcccaggtgacggaggtcaccatccggaaccggtatcaggaacagatcgaagcgatg
ggcatccactga
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