Halosquirtibacter xylanolyticus: K5X82_04660
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Entry
K5X82_04660 CDS
T10547
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hxy Halosquirtibacter xylanolyticus
Pathway
hxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X82_04660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hxy03019
]
K5X82_04660
03400 DNA repair and recombination proteins [BR:
hxy03400
]
K5X82_04660
Enzymes [BR:
hxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K5X82_04660
Messenger RNA biogenesis [BR:
hxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5X82_04660
DNA repair and recombination proteins [BR:
hxy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K5X82_04660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
MarR_2
HTH_24
Motif
Other DBs
NCBI-ProteinID:
QZT38196
LinkDB
All DBs
Position
1373883..1375979
Genome browser
AA seq
698 aa
AA seq
DB search
MNKSDALNLLRNSIDNDTAEFREGQWQAIDGIVNRKKKLLVIERTGWGKSSVYFISTRIL
RDEGKGTTIIISPLLALMRNQIEAAERLGIKAISINSTNVEDWNISKLAVLRNEVDALLI
SPERLANENFMNNILRPIADRIGLFVVDEAHCISDWGHDFRPDYRRIVNILKFMPTGMPI
LGTTATANDRVCKDIVSQLGDIEVIRGALTRESLILQNISLKDQAARLAWLKENIPNLTG
SGIVYTLTKRDAMIVTDWLNECDIDAAYYYAGAKDNNFEDSTQYRQYVEDSLYNNELKVL
VSTSALGMGYDKPDLGFVIHYQAPSSIISYYQQVGRAGRAISKAHGVLLSGREDHDIHQY
FRQSAFPPKERVEAILAIIEEHDGLSVPELMKQLNLRKGQIEQVLKYLIVEESSPVIKIG
TKWYRTAVEYDMDSDKVLRLTNQRLNEWHEMLTYIDSTDCLMNFLQNSLDDPNRTLCGKC
ANCDQKLKLSDTVQHENGVEAALFLKHSEFDFKLKIKIESEALPEYGFSGNLHQSLRAEL
GKSLSRWGDAGWGSIVAEDKHNNFFRDELVDAFVEMYNERWNTTPRPTWVTCIPSHRHPD
LVPSFAERVATKLGLPFVSVIEKIEETAPQKEQENNFFQCKNLDGAFKVNGSIKVGQPVL
LIDDAIDSGWTLTIASALLRQAGCGIVFPATLTSTSAN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgaataaatctgatgcattaaacttattgaggaattctattgataatgatacagcagag
ttccgagaaggacaatggcaagctattgatggaatcgttaataggaaaaagaaattactt
gtaatagaacgtacaggctggggaaaaagctcagtatattttattagtacaagaattctt
agagatgaaggtaagggtacaactattattatctcacctctacttgcattaatgagaaat
caaattgaagctgctgaaagattaggtataaaagcaatttcaattaactcaacaaatgtt
gaagattggaacatatccaaattagcagttcttaggaatgaagttgatgcattactaatt
tctccggaaaggcttgcaaatgaaaatttcatgaataacattttaagaccaatagcggat
agaattggtttatttgttgttgatgaagcacattgtatttcagactgggggcatgatttt
agacctgattatagaagaatagtaaatattcttaagttcatgccaactggtatgccaatc
cttggaacaacggccactgctaatgatagagtgtgtaaagatatagtttcgcagctcgga
gatatagaggtaatcagaggagctttaactagagaaagtttgattcttcaaaatatatca
cttaaagatcaagctgctagattagcttggttgaaagagaatattcctaatttaacagga
agtggtattgtttatacactcaccaaaagagatgcaatgattgtcacagattggttgaat
gaatgcgatatagatgctgcttattattatgctggagctaaggataataactttgaagac
tctacacagtatcgacagtatgtagaagactcattatataacaacgaattgaaggttctt
gtgtccacttcagcattgggtatgggctatgacaaaccagatttaggctttgttatacat
tatcaagctccaagctcaataataagctactatcaacaagtaggaagggcgggaagggct
atcagtaaagcgcatggtgttctattatcaggtcgagaagatcacgatatacatcagtac
ttcagacaatcagcctttcctccaaaagaaagagtagaggctatattagctatcattgaa
gaacacgatggtttatctgttccagagctaatgaagcaactaaacttaagaaagggtcag
atagaacaagtattgaaatatctaatcgtagaagaatcttctcctgttataaagattggt
actaagtggtatagaacagctgtagagtatgatatggattctgataaggtgttaagatta
acgaaccaaagacttaatgaatggcatgaaatgttgacgtatattgattcaactgattgc
ttgatgaatttcctgcaaaactctcttgatgatccaaatagaactctttgtggaaaatgt
gcgaattgtgaccaaaagcttaaattatcagatacggtacaacatgaaaatggagtggaa
gctgctttgtttctgaaacattcagaatttgattttaaattaaaaataaaaattgaatct
gaggcattgcctgaatatggatttagtggtaatcttcatcaaagcctccgtgcagaattg
ggtaaatctttatcaagatggggagatgctggctggggtagtatagttgcagaagacaag
cataataatttttttcgagatgaattggttgatgcatttgttgaaatgtataatgaaaga
tggaatacaactcctcgtccaacatgggtcacctgcattccttcacataggcacccagac
ttagttccttcctttgctgaacgagtagcaacgaagttgggcttaccctttgtgtcagta
atagaaaaaatagaggaaactgctcctcaaaaagaacaggaaaataactttttccaatgt
aaaaaccttgatggagcatttaaagtcaacggtagtattaaagttggtcaacctgtgtta
ctaatagatgatgcaattgattcgggatggacactaacaattgcatcggctttacttagg
caggcaggctgtggtattgtttttcctgcaactttaacttcaacatcagcaaattaa
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