Halosquirtibacter xylanolyticus: K5X82_13745
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Entry
K5X82_13745 CDS
T10547
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hxy Halosquirtibacter xylanolyticus
Pathway
hxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X82_13745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hxy03019
]
K5X82_13745
Enzymes [BR:
hxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5X82_13745
Messenger RNA biogenesis [BR:
hxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5X82_13745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QZT36323
LinkDB
All DBs
Position
3723115..3724443
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AA seq
442 aa
AA seq
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MKSFQELGVSKSILKALDEIGFEQPTPIQEKAIPAVKSGQDVLGIAQTGTGKTAAYLMPI
FGKLVKAEGVDPRAIVLVPTRELSMQVGEDIEELLTYSNLRYASVFGGVGWTKHAELIEP
GIDVLVATPGRLWDLYRAGAVSFKKVKTLVIDEADRMLDMGFMPQIRKFLEVLPVKRQNL
LFSATFPEKVEELSHEFLDFPLRVEVAPSATPAEKVSQYYVAVQNYRTKLNLVSHLLKDE
ETFKRVLVFCKTKEVAEGVFKVIKRKSEGEVKVLHSNKGQSSRINAINAFKNGEVRILIS
TDVSARGIDVSQISHVINFDMPQDYEDYVHRIGRTARANEKGTSISFIAEDELFHKDRIQ
ELMRADIEEMPMPSEVEIIPISKKEKLAQLREIDKQKRENDPDFKGAFHEKKKREPRKHP
TSFNPKSMKLRKGRKDGNNKKR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattccaagaacttggagtcagtaaatcaatactaaaggcgttagacgagata
gggtttgaacaacctacccctattcaagagaaggcgattccagcagtgaaaagtggacaa
gatgtattaggaattgcacaaacaggtacaggtaaaactgctgcttatttgatgcctata
tttggcaaattggtgaaagctgaaggggttgaccctcgtgccatcgttttggttcctaca
cgtgaactttcgatgcaggtgggcgaagacatcgaagagctattaacctactctaacctg
cgttatgcctctgtgtttggcggggttggatggaccaaacatgcggaattgattgaacca
ggtattgatgtcttagtggcgacaccaggacgtctttgggatctctatagggctggtgcc
gtctcttttaagaaagtgaagacattggtgattgatgaggcagatagaatgctagatatg
gggtttatgcctcaaatacgaaaattcttagaagtgcttcctgtaaaaagacagaacctt
ctgttttctgctactttccctgaaaaagtagaagagctgagccatgaattcttagatttt
cctcttcgtgtcgaagtagctcctagtgctacgcctgcagagaaagtgtcgcagtattat
gtggcagtacaaaactatcgtacaaagctaaatcttgtttcacaccttctaaaggacgaa
gagaccttcaaacgtgttcttgtgttctgtaagacaaaagaggtcgcagagggcgttttt
aaggtcattaaacgtaaatctgagggagaggtgaaggtgcttcactcaaacaaaggacaa
tcttctcgtatcaatgcgatcaatgcctttaaaaatggagaggttcgtatcttgatctct
acggatgtctctgctcgtggtatcgatgtttcacaaatatcacacgtgattaacttcgat
atgcctcaagattatgaggactatgtacaccgtattggacgtactgcacgtgccaatgag
aagggaacgtcgataagttttattgctgaagacgaactgttccataaagatcgtatccag
gagttgatgcgtgctgatattgaagagatgccaatgccttcagaggtggagattatccct
atctcgaagaaagagaaattggcacaattaagagagatcgataagcaaaagagagaaaat
gatccagactttaaaggggcatttcatgagaagaaaaaacgagagcctcgtaaacaccct
acctctttcaatcctaagagtatgaaattgcgtaaagggcgtaaagatggaaacaataaa
aaacgatag
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