Halosquirtibacter xylanolyticus: K5X82_15615
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Entry
K5X82_15615 CDS
T10547
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hxy Halosquirtibacter xylanolyticus
Pathway
hxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X82_15615 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hxy03021
]
K5X82_15615 (rho)
03019 Messenger RNA biogenesis [BR:
hxy03019
]
K5X82_15615 (rho)
Transcription machinery [BR:
hxy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
K5X82_15615 (rho)
Messenger RNA biogenesis [BR:
hxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K5X82_15615 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
Spore_III_AA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QZT36659
LinkDB
All DBs
Position
complement(4259091..4260839)
Genome browser
AA seq
582 aa
AA seq
DB search
MYDIIELSKKLLPDLKEIAKELNVKRVDSYKKQDLIYKILDEQAVLAVENKNEKKEIKSK
KQAPRKEAPQKKEQAPVNKKENKSTEKKEAPVAKKENKQEQPKKENKQEPREKRAQAPEK
KETVKETPRPVERKQAPKEVKSHEAKGNQPKKAEAPVKEAPAKQEDAPSNNEGEKPQERK
LNNHNKDRNNNNRDPKKQNKYGKNSDKGYEFEGIVESSGVLEIMQDGYGFLRSSDYNYLN
SPDDIYVSQSQIKLFGLRTGDNVTGTIRPPKEGEKYFPLIKVKEINGRTPDYIRDRVQFD
HLTPLFPDQKFNITGKGHNSVACRVVDMFSPIGKGQRGLIVAQPKTGKTVLLKEIANAIA
DNNPEVYMIVLLIDERPEEVTDMARSVKAEVVSSTFDEPADRHVRVANMVLEKAKRMVEC
GHDVVILLDSITRLARAYNTVAPASGKVLSGGVDANALHKPKRFFGAARNIEEGGSLTIL
ATALTDTGSKMDEVIFEEFKGTGNMELQLDRKLANRRVFPAVDITQSSTRREDLLMPKAA
MDKVWILRNYLTDMNSVEAMQFTKDRITKTRSNDEFLLSMND
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatattattgaactaagcaaaaagcttcttccagatcttaaagagatcgcaaaa
gaacttaacgtaaaaagagttgattcatacaaaaaacaagatcttatctataagatttta
gatgaacaagctgtacttgcagtagaaaacaagaacgaaaaaaaggagatcaagagcaaa
aaacaagctcctagaaaagaagctcctcagaaaaaagaacaagctccagtcaacaaaaag
gagaataaaagtaccgagaaaaaagaggctcctgttgccaagaaagagaacaaacaagag
cagcctaaaaaagagaataagcaagagcctagagagaaaagagctcaagctcctgagaaa
aaggaaacagtaaaagagacgccaaggcctgtagagagaaaacaagctcctaaagaggtg
aagagtcacgaggcgaaaggcaatcaacctaaaaaagcggaggctcctgtaaaagaagct
ccagcaaaacaagaggatgcaccttctaataacgaaggagaaaagcctcaagaaagaaaa
ctaaacaaccacaataaagatcgtaacaataacaaccgcgatccgaaaaaacaaaataaa
tacggaaagaacagcgacaaaggatacgagtttgaaggtatcgtagagagctctggtgtt
cttgaaatcatgcaagatggatatggtttcctaagatcatctgactataactaccttaac
tcacctgatgatatctatgtatcacagagccaaattaagctgtttggacttcgtacaggt
gacaacgtaacaggaactattcgtcctccaaaagagggtgaaaaatacttcccactgatc
aaagtaaaagagatcaatggacgtactcctgactacattcgtgaccgtgtacaattcgat
cacttgacaccgctattcccagatcaaaaattcaacattacaggtaaaggacacaactct
gttgcttgtcgtgtagtagatatgttctctcctattggtaaaggacaaagaggattgatc
gttgctcaaccaaagacaggtaagactgttttgttgaaagagatcgccaatgccatcgct
gataacaaccctgaagtatacatgattgtactacttatcgatgaacgtcctgaggaagtt
accgatatggcacgtagtgtaaaagctgaggtcgtttcatctacttttgatgagcctgca
gatcgtcacgtacgcgtagccaatatggtacttgagaaagccaaacgtatggtagagtgt
ggacacgatgtagtgatccttcttgactctattacacgtcttgctcgtgcctacaatacc
gtagcaccagcttcaggtaaagtactttctggtggtgtggatgccaacgctcttcacaaa
ccaaaacgtttctttggtgcagctcgtaacattgaagaaggtggatctcttaccatcctt
gcaacagcacttactgataccggttctaagatggacgaagtaatctttgaagagttcaag
ggtacaggtaacatggaacttcagttagatagaaaacttgccaaccgtcgtgtattccca
gctgtggacatcactcagtcaagtacgcgtagagaagatctattaatgccaaaagctgca
atggataaagtttggattcttcgtaactatcttacagatatgaactcagtagaagccatg
cagttcacgaaagatcgtatcacaaaaacacgaagtaatgatgagtttttgttgtcaatg
aacgactaa
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