Halosquirtibacter xylanolyticus: K5X82_17660
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Entry
K5X82_17660 CDS
T10547
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hxy Halosquirtibacter xylanolyticus
Pathway
hxy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hxy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5X82_17660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hxy03021
]
K5X82_17660 (rpoC)
03400 DNA repair and recombination proteins [BR:
hxy03400
]
K5X82_17660 (rpoC)
Enzymes [BR:
hxy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5X82_17660 (rpoC)
Transcription machinery [BR:
hxy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5X82_17660 (rpoC)
DNA repair and recombination proteins [BR:
hxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5X82_17660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QZT37038
LinkDB
All DBs
Position
4813686..4817942
Genome browser
AA seq
1418 aa
AA seq
DB search
MAFRRDNKVKSNFSKLSISLSSPEEILERSHGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYRGIVCDRCGVEVTEKKVRRERMGHISLVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDTIIYYERYVVINPGVKRDDGVKYLDFLTEEEYLDILDTLPRENQMLDD
DDSEKFIAKMGAEALYSLLERLELDTISYELRHKASTETSQQRKNDALKRLQVVEAFRAS
KKRNRPEWMIVKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQESVDSLFDNSRKSNAVKTENNRALKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPTLKIQECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKDPVV
WDILENVMKGHPVLLNRAPTLHRLSIQSFQPRLVEGKAIQLHPLVCTGFNADFDGDQMAV
HLPLGNAAILEAQLLMLSAHNLLNPANGAPITVPSQDMVLGLYYMTKPRKGVKGEGLCFY
SPEEVEIAFNEGKADLHAIVKVKTTDLNEDGEQEIRLIETTVGRILFNQFVPNEAGYLDK
LLTKKALRDIIAHILKVTDNATTAKFLDDIKNLGYRMAYLGGLSFNLADVVIPDAKAEMV
TEGYQEVEEIMNNYNMGFITNNERYNQVIDTWTHVNAKLTNTVMNTLSSDNQGFNSVYMM
LDSGARGSKEQIRQLCGMRGLMAKPQKSGSTGAQIIENPILANFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVAHDVIVSQQDCGTLRGLTASAIKNNEEVVASLYERI
VGRCTVHDIFHPLTGELIVRAGGQITDEIGYAIENSPIEKVEIRSVLTCESKQGVCAKCY
GTNLASARMAQEGESIGVVAAQSIGEPGTQLTLRTFHVGGIAGNVSSQSTVVAKYEGIAE
IDELRSVPFVDEDGKSVDIVVSRLAELRVVDKNTKITLSTHALPYGSKLFMKEGQEISKN
DLICEWDPYNGVIITEFEGRIEFSDLQDGITYREESDEQTGFAEKVIIENRDRTKNPSLR
IVDEEGELIKSYNLPVGGHVNVDEGQVVTKGVVLVKIPRASGKAGDITGGLPRVTELFEA
RNPSNPAVVSEVDGEVSFGKIKRGNREIIVMTRLGDIKKYLVPLSRQILVQENDYVRAGT
PLSDGAITPSDILRIEGPTKVQEYIVNEVQDVYRMQGVKINDKHFEVIVRQMMRKVEIDD
PGDTKFLERHLVDKHEFMKENDWIYDKKVIIDSGDSENFKQGMIVTARQLRDENSQLRRK
DLKVIESRDAVPATSGQILQGITRAALQTKSWMSAASFQETTKVLNEAAINGKVDNLEGM
KENVICGHLIPAGTGRKLYRNLVVGSKEDYDRLVDSKD
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atggcattcagaagagataataaggttaaaagtaacttttcgaagttgtctatcagtctt
tcttctccggaagagattctagaaagatcacatggtgaggtgcttaagcctgaaacaatt
aattaccgtacatataagccagaaagagatggccttttctgtgaacgcatttttggtcct
gtaaaggattatgagtgtcattgcggtaaatataagcgtatccgttatcgtggtattgtt
tgtgaccgttgtggtgttgaagtaacagaaaaaaaagtacgtcgtgagcgtatgggacat
atctctttggttgttcctgttgcccatatatggtactttaaatctctaccaaataaaatt
ggttatcttctagggttaccaacgaagaaattagatacaatcatctattacgaaagatac
gtggttattaatccaggtgttaaacgtgatgatggagttaaatatttggattttcttact
gaagaagagtatttagatattcttgatacacttcctcgtgaaaaccaaatgcttgatgat
gatgattcagagaagtttattgctaaaatgggtgccgaagctttgtattcattgctagag
cgtcttgagcttgatacaatttcttatgaattacgtcataaggctagtacagaaacttca
caacagagaaagaatgatgctctaaagcgtcttcaggttgtagaggctttccgtgcgtcg
aagaagagaaaccgtccagagtggatgattgtgaaggtggttccagttattccaccagat
ctacgtcctcttgtgccactcgatggtggacgtttcgcaacttccgatttgaatgacctt
tatcgtcgtgtgattattcgtaataatcgtttgaagcgattgattgagattaaagctcct
gaggttattcttcgtaatgagaagagaatgttgcaagagtctgttgattcattgtttgac
aattcgcgtaaatcgaatgctgttaagacagagaacaatcgtgctcttaaatcattatct
gattcattaaaaggtaagcaaggtcgtttccgtcaaaaccttcttggtaaacgtgttgac
tattctgctcgttctgttatcgttgtaggacctactcttaagattcaagagtgtggtatc
cctaaagatatggcagctgagctttacaaaccattcatcattcgtaagttgattgagcgt
ggtattgtaaaaacagttaagtccgcgaagaagattgtagatagaaaagatcctgttgtt
tgggatatcttagagaatgtgatgaaaggtcatccagtgctacttaaccgtgcaccgacg
cttcaccgtttgtctattcaatcattccagcctcgcctagttgaaggtaaagcgattcag
ttacaccctcttgtgtgtactggtttcaatgccgatttcgatggtgaccagatggcagtt
cacttaccacttggtaatgctgcgattttggaggctcagttgttgatgctttctgctcat
aaccttcttaacccagcgaatggtgctcctattacagtaccttcacaggatatggttctt
ggtctatattatatgactaagccaagaaaaggagttaagggagagggactttgtttctat
tctccagaggaagttgagattgccttcaatgaaggtaaagcagatcttcacgctattgtt
aaggtgaagacaacagacttaaatgaagatggagagcaagaaatacgtcttattgaaact
acagtaggtcgtatcttattcaaccaatttgtaccaaacgaggcaggttaccttgacaag
ttgttgactaagaaagctcttagagatattattgcacatatcttgaaagtaactgataat
gctacaacagctaagttcttagatgatattaagaaccttggttatcgtatggcttacctt
ggtggtctatcgtttaacctagccgatgtggttattcctgatgcgaaagcagagatggtt
acagaaggttaccaagaggttgaagagattatgaataactataacatgggattcattacc
aataacgaacgttataatcaggtaattgatacatggacccatgttaatgcgaagttgaca
aatacagtgatgaatactttgagttctgataaccaaggtttcaactctgtatatatgatg
cttgactcaggagcccgtggttctaaagagcagattcgtcagctttgtggtatgcgtgga
ctgatggcaaaaccacaaaagtctggatcaacaggtgctcagattattgagaacccgatt
cttgcaaactttaaagagggtctttctgtcttagagtactttatctctactcacggtgca
cgtaaaggtcttgcggatacggcattgaaaacagccgatgcgggttatttgactcgtcga
ctagtagatgttgcgcatgatgttatcgtatctcaacaagattgtggaacacttcgtgga
ttaacagcttcggcaattaagaataatgaagaggttgttgcctctctttatgaaagaatt
gttggtcgttgtactgttcatgatattttccatccattaacaggtgaacttattgttcgt
gctggtggacagattactgatgagattggttatgcgattgaaaactctccaattgagaaa
gttgaaattcgttctgttcttacttgtgagtctaagcaaggtgtttgtgctaaatgttat
ggtacaaatctagcttctgctagaatggcacaagaaggtgaatctattggtgttgttgca
gcacagtcaattggtgagccgggaacacagcttacacttcgtactttccacgtagggggt
attgcaggtaacgtttcttctcagtctactgttgtagctaaatacgagggtattgctgag
attgacgaactacgttctgttccttttgttgatgaagatggtaaaagtgtagatatcgtt
gttagccgtttggctgagttacgtgttgtagataagaatactaaaattacactttctaca
catgctcttccttatggttcgaaattattcatgaaagagggtcaggaaatttctaagaat
gaccttatttgtgaatgggatccatataacggtgtaatcatcactgagtttgaaggacgt
attgagttctcagatttacaggatggtatcacttatcgtgaagaatcggatgagcaaaca
ggttttgctgagaaggttattatcgagaaccgtgatagaactaagaatccaagtttacgt
attgtagacgaggagggagagttgatcaagtcttataacttgccagttggcggtcacgtt
aatgtggacgaaggacaggtagttactaaaggtgttgttcttgttaagattcctcgtgct
tcaggtaaagcaggtgatattaccgggggtcttcctcgtgttactgagttgtttgaggct
cgtaacccatctaatccagctgttgtttcagaggttgatggtgaggttagtttcggaaaa
atcaagcgtggtaaccgagagattatcgtaatgactcgtttgggtgatattaagaaatat
cttgtacctctttctcgtcagattcttgttcaagaaaatgattatgtaagagcaggtaca
ccactttctgatggagctattactccttctgatatcttgcgtattgaaggacctactaag
gttcaggaatatatcgtgaatgaagttcaagatgtataccgtatgcagggtgtgaagatt
aatgataagcactttgaggttatcgttcgtcagatgatgcgtaaggttgagattgatgat
ccgggagatactaaattcctagagcgtcacttagttgataagcatgagttcatgaaagag
aatgattggatctacgataagaaggttattattgattctggagattcagaaaacttcaaa
caaggtatgattgttacagcacgtcaattgcgtgatgaaaactctcaattacgccgtaaa
gatttgaaggttattgagtcaagagatgcagtaccagcgacttctggtcagattcttcaa
ggtatcactcgtgcagcgcttcaaacgaagagttggatgtctgctgcttctttccaggag
acgactaaagtcttgaatgaggctgctatcaacggtaaagtggataacctagaaggtatg
aaagagaatgtgatttgtggacatttgattcctgcaggtactggacgtaaactgtacaga
aacctagttgttggatcaaaagaagactatgatcgtttggttgattctaaagactaa
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