Halosquirtibacter xylanolyticus: K5X82_17965
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Entry
K5X82_17965 CDS
T10547
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hxy Halosquirtibacter xylanolyticus
Pathway
hxy03018
RNA degradation
Brite
Enzymes [BR:
hxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5X82_17965
Messenger RNA biogenesis [BR:
hxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5X82_17965
Ribosome biogenesis [BR:
hxy03009
]
Prokaryotic type
rRNA helicases
K5X82_17965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RecG_N
YpjP
Nop5_N
Motif
Other DBs
NCBI-ProteinID:
QZT37097
LinkDB
All DBs
Position
4891057..4892964
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AA seq
635 aa
AA seq
DB search
MSFDTLGLREELVLGVKELGFENPTPIQSEAIPLLLEEQSDFVGLAQTGTGKTAAFGLPL
LNSIDSTISDTQGVIVCPTRELCLQIEKDLNNFAKMMPWVRIVSVYGGANIALQIKELRR
GAHIIVATPGRFVDLISRGKARLEQVKVAVLDEADEMLNMGFKAELDAILEATPDHRSTW
LFSATMPAEVKRISKAYMSNPKELSVGGVNETSNNISHEYYAVRERDRYEALKRVIDFQP
NIYGVVFCRTRMETQEIADKLMRDGYSADSLHGDLSQAQRDAVMNSFRKKRIQMLVATDV
AARGIDVSDLTHVIHYKLPDDPEVYTHRSGRTGRAGKKGTSIAFITSKEQRRIQDIQRTV
KAKFEAKEIPSIEDICQTKLYSLVDDLKDVTVHDQEIDQYIEKVSDKLDELSREELIKKI
VSKEFNQFLDYYRNARDISCDFKQLSKRSREDRSSRTSQPTRSGMSRFFINAGHLDGLNK
GALVRIICESTNMRGHLIGAIDIKSAYSFFEVETSSSDQVVNSSSNFDFEGKSLRVEKAE
GGGGSDRRSGGGDRRRSGGGDRRRSGGGSDRRSGGSDRRGGGSDRRSGGSSDRRGGDGDR
RSGSGKFNGGDDNFHDNGGGNRRFGNKRRSFKRSN
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgatacattaggattacgcgaagagttagtgttaggggtcaaagagttaggt
tttgagaaccctacaccaattcagtctgaagcgatccctttattgctagaggagcagtcg
gattttgtcggattggctcaaacgggaactgggaaaacagcagcatttggtctgccatta
ttgaatagtattgattctactattagtgacactcagggtgtcatagtctgtccaacacgt
gaattgtgccttcaaatcgaaaaagatttgaataattttgcaaagatgatgccttgggtg
cgtatcgtgtctgtatatggtggggctaatatcgcattgcaaatcaaagagcttagaaga
ggagcacatattattgtggctactccagggcgttttgttgaccttatttcgagaggaaag
gctcgtctagagcaggttaaggttgcagtgcttgatgaggctgatgagatgctaaatatg
ggcttcaaggctgaattagatgccatcttagaagcaaccccagaccacagatctacttgg
ttgttttctgcaaccatgccagcagaggttaaaaggatttcaaaagcttacatgtccaac
ccgaaagagttatcggttggaggagtgaatgaaacttcaaataatatttctcacgaatac
tatgctgttcgtgaaagagatcgttatgaagcactaaaacgagttattgattttcagcca
aatatctatggtgttgtgttctgtcgcactagaatggagacacaagagattgctgataaa
ttaatgagagatggttatagtgccgattcattacatggtgatttatctcaagcacaacgt
gatgctgtgatgaactcatttagaaagaaacgcattcaaatgttggttgctactgatgta
gctgctcgtggaattgacgtttcagatcttacccatgtaattcattacaaattaccagat
gatccagaagtgtatacacaccgaagtggtcgtactggacgtgcgggtaaaaaaggtact
tctattgcctttattacaagcaaagaacaacgtcgtattcaagatattcaacgaactgta
aaagctaagtttgaagcaaaagagataccttctattgaagatatttgccaaactaaactt
tattctttagttgatgacctaaaagatgttacggttcatgatcaagagattgatcaatat
attgaaaaggtttcggataaattagatgagctttcaagagaagagttaatcaaaaagatt
gtttctaaagagtttaatcaattcttagattactatcgtaatgctcgtgatatctcttgt
gatttcaaacaactgtctaagagatcaagagaagatcgtagtagtcgtactagtcagcct
actaggagcggaatgtctcgattctttatcaatgcaggtcatcttgatggcttgaacaaa
ggtgcattggttcgtatcatttgtgagtcaacaaatatgcgtggtcaccttatcggtgct
attgatatcaaatcggcatactctttcttcgaggtagaaactagttcttctgatcaagta
gtgaactcttcatctaactttgactttgaaggaaagagtttaagagtcgagaaagccgaa
ggtggcggtggaagtgatcgtcgcagtggcggtggagatcgtcgtcgtagtggcggtgga
gatcgtcgtcgtagtggcggtggaagtgaccgtcgtagtggtggaagcgaccgtcgtggt
ggtggaagtgaccgtcgtagtggtggaagttctgatcgtcgcggtggtgatggagatcgt
cgtagtggaagtggaaaatttaatggaggagatgataatttccacgataatggtggtgga
aatcgccgttttggaaataaaagaagaagttttaagagaagtaactaa
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