Hydrogenobaculum sp. Y04AAS1: HY04AAS1_1612
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Entry
HY04AAS1_1612 CDS
T00745
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hya
Hydrogenobaculum sp. Y04AAS1
Pathway
hya03030
DNA replication
hya03430
Mismatch repair
hya03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HY04AAS1_1612
03430 Mismatch repair
HY04AAS1_1612
03440 Homologous recombination
HY04AAS1_1612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hya03032
]
HY04AAS1_1612
03400 DNA repair and recombination proteins [BR:
hya03400
]
HY04AAS1_1612
Enzymes [BR:
hya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HY04AAS1_1612
DNA replication proteins [BR:
hya03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HY04AAS1_1612
DNA repair and recombination proteins [BR:
hya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HY04AAS1_1612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
POT1
GeBP-like_DBD
tRNA_anti_2
DUF406
DUF6282
Motif
Other DBs
NCBI-ProteinID:
ACG58293
LinkDB
All DBs
Position
1529552..1533157
Genome browser
AA seq
1201 aa
AA seq
DB search
MKDFVHLHLHTQYSLLDGAIKIKDLAKKAKEYGYKAVAITDHGNLFGTMSFYKEMKANGI
KPIIGMEAYFTTGKRTEHKGKGSEDNITDRINHHIILLAKNDTGLKNLMKLSSIAFIEGF
YYKPRIDYEVLEQHAEGLIALTACLKGVPTFYAAQGNEEMAYNWVKKFKDIFGDDLYLEL
QSNHIPAQETANKTLIDIAKRYNVKFAATNDCHYLLEEDLRAHNVLMAIQMKKTLQELGE
DAFGHYDGMHFASYEEMVKKFEGKWSEWEKALLNTVEISEKVADSLSIFEDKSYKFPEFF
KGDDINVNISSYLRNLAVEGLKSRIQKSQISKNIPEKEYWDRLNYELEVIQNMGFDSYFL
IVSDFINWSKSNNIPVGPGRGSAAGSLVAFALNITDVDPLKHGLIFERFLNPERISMPDI
DVDFCMDNRDKVIEYVKEKYGKDSVAQIITYNTMKAKQTLRDVARAMGMAYKDADVLAKL
IPQGNVQGTWLSLEEMYITPIEELMERYGHRGDIEDNVKKFRDLAKKDPQIKELVEISIK
LEGLTRHTSLHAAGIVIAPKPLIELAPLYLDKSVKDDTGNIATQYDMAHLEELGLVKMDF
LGLKTLTELWKMKELVKQNKGVDIDFLSLDFNNKEIYEFLATGETIGVFQLESKGMRELI
KRLKPDRFEDIVAALALYRPGPIKSGMVDKFINRKLGKEKVVYEFEELEEVLKETYGLIV
YQEQIMFISNILAGFTMGEADNLRKAIGKKKADLMAKIKDDFIRRSCERGYPKDKIEKLW
SEIEEFASYSFNKSHSVAYGYISFWTAYVKLYYPDEFYAVKFSTENSDKKFINLLKDAKS
FGIKVLPPDVNKSDVDFKIEVPRHIRFGLGRIKGVGEDTARHIKSMQEKIGRDFLSFQDF
TKNTDNRKVNKKVLEALSKAGAFDSLIEKSGYKNREDFLSRLLNSQDISSIAQRSLFGIK
ASKSTEQMEQSSSIDILKLEKEVLGFYISGHPLDKYSWILSHNKDITNIEDIDFDNMPNQ
AIDSEAGQNASAEYTIVGVISDLQIKKTKNGSYMAIFNLVDKTDIVEVVVFPDRYASSEG
IIKEDEVVVVKGVLDIDIENENLKIVANDLYSIDSLLNQYNTLTLKIDEEKAKNGFLEKL
KSMLDKYTPKTNEDVMKTQKVVLELDVSSYRAIVQTSKDVVLSKTLIEELSKYGIEFSLA
S
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgaaagattttgtgcatcttcatcttcacacccaatattcgcttttggacggagctata
aagataaaggatttggctaaaaaggcaaaggaatacggctataaggctgtggctataacg
gatcatggtaacctttttggtactatgagcttttacaaagagatgaaggcaaacggtata
aagcccattataggtatggaagcttactttaccacaggaaaaagaactgagcataaagga
aaaggttctgaagataacataacagatagaataaaccaccatatcatacttttggcaaaa
aacgacactgggcttaaaaacctcatgaagctttcttctatagcttttattgaaggcttt
tactataaaccaaggatagattatgaagtgttagagcagcatgcggaaggtctaatcgct
ttgacggcctgtcttaagggagtgcctactttttacgcagctcaaggcaacgaagagatg
gcttataattgggttaaaaagtttaaagatatctttggggatgatctttatttagagctt
caatcaaatcatataccagctcaggaaaccgccaataaaacccttatagatatagccaaa
agatacaacgtaaagtttgcggccaccaacgattgtcattaccttttggaagaagatttg
agggctcacaacgtgttgatggcaattcagatgaaaaaaacacttcaggagcttggagaa
gatgcttttgggcactatgatggtatgcactttgcctcatacgaggagatggtaaagaaa
tttgaaggaaagtggagtgagtgggaaaaagcgcttttaaacactgttgaaatatcagaa
aaagttgcagattctttaagcatatttgaagacaaatcttacaagtttcctgagtttttt
aaaggtgatgatataaatgtcaatatatcttcttaccttagaaatttagccgttgagggt
cttaaaagccgtatacaaaaatctcaaataagcaaaaatataccagaaaaagagtactgg
gacagactaaattatgaattagaagtaatacaaaatatgggttttgatagttatttcttg
atagtatcggattttataaactggtcaaaatcaaacaacatacccgtgggtcctggaaga
ggttctgcggctgggtctttggtggcttttgctctaaacattacagacgttgatccgtta
aagcacggacttatcttcgaaagatttttaaatccagagcgtatatctatgccagatata
gatgtagacttttgcatggacaaccgggataaggttatagagtatgtaaaagaaaaatac
ggcaaagattctgtagctcagatcattacttacaatacgatgaaagctaaacaaaccctt
agagatgtggcaagggccatgggtatggcttacaaagacgccgatgtactagcaaaactt
atacctcaaggcaacgtccaaggtacttggctaagccttgaagagatgtatataacgccc
atagaagagttgatggagcgttatggacacagaggagatattgaagataatgtaaaaaaa
tttagagaccttgcaaaaaaagaccctcagataaaagagcttgtggaaatatctataaaa
cttgagggtcttacaaggcatacatctttgcatgctgctggtattgtgatagctccaaaa
ccccttatagagttggcacctttgtatcttgataaatcggtaaaagatgatactggcaac
atagctacccaatacgatatggctcatttagaagagcttgggcttgtcaaaatggacttt
ctcggattaaaaacgcttacagagctatggaagatgaaagagcttgtaaaacaaaacaaa
ggtgtagatattgatttcttgtctttggattttaacaacaaagaaatttacgaattttta
gctaccggtgaaacgataggggtgtttcaactggaatcaaagggcatgagggagcttata
aaacgtttaaaaccagatagatttgaagatattgtagccgctttagccctttatagacca
ggtcctataaaaagcgggatggtagataaatttataaatagaaaacttggtaaagaaaaa
gttgtatacgaatttgaagagcttgaagaggtgctaaaagaaacttatggtctcattgtt
tatcaagagcagatcatgtttatatcaaacattcttgctgggtttaccatgggagaggca
gataatttgagaaaggctataggtaagaaaaaggctgatctcatggcaaagataaaagat
gatttcataagaagaagctgtgaaagaggctatcctaaggataaaatagaaaaactttgg
tctgaaatagaggagtttgcctcttattctttcaacaaatctcactctgtggcttacggt
tacatatctttttggactgcttacgtgaagctttactatccagatgagttttatgctgtg
aaattttctacagagaactccgataagaagtttataaaccttttaaaagatgcgaagtct
tttggtataaaagtattacctccagatgtaaacaaatccgatgtagattttaagatagaa
gttccaagacacataaggtttgggcttggaagaataaagggtgttggtgaggataccgca
agacatataaaatctatgcaagaaaaaattggaagagactttctaagttttcaagatttt
accaaaaacacagacaataggaaagtgaataaaaaagttttagaagctctttcaaaagca
ggggcttttgatagtcttatagaaaaaagcggttataaaaatagagaagattttctctca
aggcttttgaattctcaggatatatcaagcatagcccagaggtcgttgtttggtataaaa
gcctcgaaatccactgagcagatggaacaaagctcttctatagatatattaaaattagaa
aaggaggttcttggtttttatatatctgggcatccactggacaaatacagctggatttta
tctcacaacaaagacataacaaatatagaagatatagattttgacaatatgccaaaccaa
gccatagacagcgaggctgggcaaaacgcatcggcggaatatacgattgtgggtgttata
agcgatttacagattaaaaaaaccaaaaatggttcttacatggctatttttaaccttgtg
gataaaacggatattgttgaagttgtggttttcccggataggtatgcatcttctgaaggt
attataaaagaagatgaagtggtggtggtaaagggtgttttagacatagacattgaaaat
gaaaaccttaagatagtggcaaatgatctttattctatagattctttgctaaatcaatac
aacacgctaactcttaagatagatgaggaaaaagcgaaaaacggctttttagaaaagctt
aaatctatgctggacaaatatacgcctaagactaacgaagatgttatgaaaactcaaaaa
gttgtattggaactagacgttagctcctatagggctatagtacaaacctccaaggatgtg
gtgctttcaaaaaccctcatagaagaactcagtaaatacggtatagaattttctttggca
tcttaa
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