Hydrogenophaga sp. PBC: Q5W_02790
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Entry
Q5W_02790 CDS
T04491
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q5W_02790
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
hyb02022
]
Q5W_02790
02035 Bacterial motility proteins [BR:
hyb02035
]
Q5W_02790
Two-component system [BR:
hyb02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
Q5W_02790
Bacterial motility proteins [BR:
hyb02035
]
Pilus system
Twitching motility proteins
Q5W_02790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
AAA
HTH_23
AAA_16
DUF8010
HTH_30
AAA_2
HTH_28
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AOS77986
LinkDB
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Position
complement(556691..558196)
Genome browser
AA seq
501 aa
AA seq
DB search
MSTSASASILVVDDEPDLRTLYELTLLREGHAVTTAANLEQAREGLAQQRFDVLITDMQL
PDGLGLTLLREVADGQRTEKCIVITAFGSAENAVESLKAGAFDYLTKPVDLRQLRGAVTS
ALRGQRAPLAAVPANEPTRSAPPPPSGVRALARLVGQAPSIVQIKARIEKVATSMAPVLI
LGESGTGKELVARAVHECSHRASGPFIAVNCGAIPENLIEAEFFGARKGAYTGASADREG
YFQAAHGGTLFLDEIGDLPLAMQAKLLRVIQERRVRSLGAVQEDAVDVRLVSATHRDLPA
LVQAGQFRQDLYYRLNVIGLRTPALRDRPEDLPLLAQALLERLCAEAGQAVPELSSAALA
WLQARELPGNVRELENLLQRALALANGPVLHAADFGETGDTEPATLPDPLPDPLAASEPY
RFVPLSPPEADSGESLPSDLQRYLDDQERQVLLKALQECGFNRTAAAARLGLNLRQIRYR
IQRLGIVVPGAPGHGDSDAAD
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgtccacctccgcgagcgcctccatcctggtcgtcgacgacgagcccgacctgcgcacc
ctctatgaactgacgctgctgcgcgagggacacgccgtcaccaccgccgccaacctggag
caggcccgcgagggcctggcccagcaacgcttcgacgtgctcatcaccgacatgcagctg
cccgacggcctggggctgacgctgctgcgtgaggtcgccgacggccagcgcaccgagaag
tgcatcgtgatcaccgctttcggctccgccgagaacgcggtcgagtcgctcaaggccggt
gccttcgactacctcaccaagccggtcgacctgcgccagttgcgcggggccgtcacctcg
gccctgcgcggccagcgcgcgccgctggccgccgtgcccgcgaacgagcccacccgcagt
gcgccaccgccgcccagtggggtgcgcgccctggcccgcctggtcggccaggcgcccagc
atcgtgcagataaaggcccgcatcgagaaggtcgccaccagcatggcgccggtgctcatc
ctcggcgaatcgggcactggcaaggagctcgtggcgcgcgccgtgcacgaatgcagccac
cgcgccagcggccccttcatcgccgtcaactgcggcgccatccccgaaaacctcatcgag
gcggagttcttcggcgcgcgcaagggcgcctacaccggcgccagcgccgaccgcgagggc
tacttccaggccgcgcacggcggcaccctgttcctcgacgagatcggcgacctgccgctg
gccatgcaggccaagttgctgcgcgtcattcaagaacgccgcgtgcgctcgctcggcgcc
gtgcaggaagacgcggtcgacgtgcgcctggtcagcgccacgcaccgcgacctgcccgcg
ctcgtgcaggccggccagttccgccaggacctgtactaccgcctcaacgtcatcggcctg
cgcacgcccgccctgcgcgaccgccccgaagacctgcccctgctcgcgcaggccctgctg
gaacgactgtgcgccgaagccggccaggccgtgcccgagctgtcgtccgccgcgctggcc
tggctgcaagcgcgggaactgccaggcaacgtgcgcgaactcgagaacctgctgcagcgc
gcgctggccttggccaacggcccggtactgcacgccgcagacttcggagagaccggcgac
actgagcccgctaccttgcccgacccgctacccgaccccctggcggcgagcgaaccctac
cgcttcgtgccgctgagcccacccgaggcggacagtggcgagtcgctccccagtgacctg
cagcgctacctcgacgaccaggagcgccaggtgctgctcaaggcgctgcaggagtgcggc
ttcaaccgcaccgcggcggcggcccgcctgggcctgaacctgcgccagatccgctaccgc
atccagcgcctgggcatcgtggtgcccggcgcgcccggccatggcgacagcgacgccgcg
gactga
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