Hydrogenophaga sp. PBC: Q5W_04110
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Entry
Q5W_04110 CDS
T04491
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Q5W_04110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyb03019
]
Q5W_04110
03009 Ribosome biogenesis [BR:
hyb03009
]
Q5W_04110
Messenger RNA biogenesis [BR:
hyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q5W_04110
Ribosome biogenesis [BR:
hyb03009
]
Eukaryotic type
Pre-60S particles
RNases
Q5W_04110
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Ribosomal_L10
pP_pnuc_1
Motif
Other DBs
NCBI-ProteinID:
AOS78219
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All DBs
Position
834888..835493
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AA seq
201 aa
AA seq
DB search
MTENRGMSSNPADITAPEMPALAKNDQNLVWIDCEMSGLDPEKERLLEIAVVITGPQLTP
RIEGPVIVVHQSDAVLDAMDAWNKGTHGRSGLIDKVRASAVSEAEAEQQLIDFIARYVPK
QASPLCGNTIGQDRRFLVKYMPRLEAYLHYRNVDVSTLKELAKRWRPEVVDAFKKRQMHT
ALADVHESIDELEHYRAQFLR
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atgacggagaatcgcgggatgagttcgaatcccgctgatatcaccgcccccgagatgccc
gcgctcgcgaagaacgaccagaacctggtctggatcgactgtgaaatgagcggtctggac
cccgagaaggagaggctgctggagatcgcggtggtcatcaccggccctcagctcacgccg
cgcatcgaaggccccgtcatcgtggtccaccagagcgacgcagtgctcgacgccatggac
gcctggaacaagggcacgcatggtcgcagcggtctcatcgacaaggttcgcgccagcgcc
gtgagcgaagccgaggccgagcagcagctcatcgactttatcgcgcgctacgtgcccaag
caggcctcgccgctgtgcggcaacaccatcgggcaggaccgccgcttcctcgtgaagtac
atgccccggctcgaggcctacctgcactaccgcaacgtcgacgtgagcacgctgaaggaa
ttggccaagcgctggcgcccggaggtggtcgacgccttcaagaagcgtcagatgcacacc
gcgctggccgacgtgcacgagtccatcgacgaactggagcactaccgcgcgcagttcctg
cgctga
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