Hydrogenophaga sp. PBC: Q5W_05095
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Entry
Q5W_05095 CDS
T04491
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03420
Nucleotide excision repair
hyb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q5W_05095
03430 Mismatch repair
Q5W_05095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_05095
Enzymes [BR:
hyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q5W_05095
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q5W_05095
MMR (mismatch excision repair)
Other MMR factors
Q5W_05095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AOS78384
LinkDB
All DBs
Position
1025937..1028300
Genome browser
AA seq
787 aa
AA seq
DB search
MPLDTPPNASPLVAGLNPEQAAAVTLPAEHALILAGAGSGKTRVLTTRIAWLLQTGQVGP
GGVLAVTFTNKAAKEMVTRLSALLPVNVRGMWIGTFHGLCNRLLRAHHQLAGLPATFQIL
DTQDQLSAIKRLCKQFNVDDERFPPKQLQYFISGCKEDGMRARDVPARDEDTRKKVELYA
LYEEQCQREGVVDFGELMLRSYELLRDQDAIRAHYQRRFRHILIDEFQDTNKLQYAWIKL
FSPPPMEGLDVQGNAVFAVGDDDQSIYAFRGARVGNMADFVREYRVPQKNQIKLEQNYRS
VSNILDAANHLIGHNQRRLGKNLRTEAGAGELVRINESVSDFAEAQWIVDEIKALVREEV
PRSEIAILYRSNAQSRVVETALFNAGLPYRVYGGLRFFERAEVKHALAYLRLIENPRDDT
SFLRVLNFPPRGIGARSVEQLQDVARAAGCSLHDAVSAVTGRAGTAIAGFVAKVDVMRER
SEGSNLKDIVELVLEHSGLVEHFRQEREGQERVENLEELVNAAESFVMQEGFGREAVALT
QSPASQGLDLNAPVLDQPLAPDADTGETLSPLAAFLSHAALESGDNQAQAGQDAVQLMTV
HAAKGLEFDCVFIGGLEEGLFPHENAMSDRDGLEEERRLMYVAITRARKRLYLSHSQTRL
LHGQTRYNLKSRFFDELPEHCLKWLTPPQASGWGGMGSAGWGGHRAMGAPVPQPAWSPAW
KATSAPPPEPDRGTPIKSGMAVFHNKFGEGKVLAVEGAGDDARAQVSFPRHGTKWLALSV
AKLTPIE
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgcccctggacacccccccgaatgcctcgccgctggtcgccggcctcaaccccgagcag
gccgccgccgtcaccctgcccgccgaacacgcgctcatcctcgcgggcgccggctcgggc
aagacgcgcgtgctcaccacgcgcatcgcctggctgctgcagaccgggcaggtgggcccg
ggcggcgtgctggccgtgaccttcaccaacaaggccgccaaggaaatggtcacgcgcctg
tcggccctgctgcccgtcaacgtgcgcggcatgtggatcggcactttccacggcctgtgc
aaccgcctgcttcgtgcccaccaccagctcgcgggcctgcccgccaccttccagatcctg
gacacgcaggaccagctctcggccatcaagcgcctgtgcaagcagttcaacgtggacgac
gagcgctttccgcccaagcagttgcagtacttcatcagcggctgcaaggaggatggcatg
cgagcgcgcgacgtgcccgcgcgcgacgaggacacgcgcaagaaggtcgagctgtacgcg
ctgtacgaggagcagtgccagcgcgagggcgtggtcgatttcggggagctgatgctgcgc
agctacgagctgctgcgcgaccaggacgccatccgcgcgcactaccagcggcgctttcgc
cacatcctgatcgacgagttccaggacaccaacaagctgcagtacgcctggatcaagctg
ttctcgccgccgccgatggagggcctggacgtgcagggcaacgcggtgttcgccgtgggc
gacgacgaccagagcatctacgcctttcgcggcgcgcgcgtgggcaacatggccgacttc
gtgcgcgagtaccgcgtgccccagaagaaccagatcaagctggagcaaaactaccgaagc
gtcagcaacatcctcgacgcggcgaaccacctcatcggccacaaccagcgccgcctgggc
aagaacctgcgcaccgaggccggcgcgggcgagctggtgcgcatcaacgaatcggtgagc
gactttgccgaggcgcagtggatcgtggacgagatcaaggcgctggtgcgcgaggaagtg
ccaaggtcggagatcgccatcctctaccgcagcaacgcgcagagccgcgtggtggaaacc
gcgctgttcaacgccggcctgccctaccgcgtgtacggcggcctgcgctttttcgagcgc
gccgaggtcaagcacgccctggcctacctgcgcctgatcgagaacccgcgcgacgacacc
agcttcctgcgcgtgctcaactttccgccgcgcggcatcggcgcgcgcagcgtggagcag
ttgcaggacgtggcccgcgcggctggctgctcgctgcacgacgcggtgagtgcggtcacc
ggccgcgcgggcacggccatcgccggcttcgtggccaaggtcgacgtgatgcgcgagcgc
agcgagggcagcaacctcaaggacatcgtcgagctggtgctggagcacagcggcctggtg
gaacacttccgccaggaacgcgagggccaggagcgtgtggaaaacctggaggaattggtc
aacgcggccgagagcttcgtgatgcaggaaggcttcggccgcgaggcggtggcgctcacg
cagagtccggcgagccaggggctggacctgaacgcaccggtgctcgaccagccgctggcg
cccgacgccgacaccggcgagaccctgagcccgctggcggcctttctctcgcacgccgcg
ctcgaatcgggcgacaaccaggcccaggccggtcaggacgcggtgcagctcatgaccgtg
catgcggccaagggcctggagttcgactgcgtgttcatcggtggtctggaggaaggtctg
ttcccccacgagaacgccatgagcgaccgcgacggcctggaagaagagcgtcgcctgatg
tacgtggccatcacgcgcgcccgcaagcgcctgtacctgagccattcgcagacgcggctg
ttgcacggccagacgcgctacaacctcaagagccgcttcttcgacgagttgcccgagcac
tgcctgaagtggctcacgccgccgcaggcctcgggctggggcggcatgggcagcgccggc
tggggcgggcaccgtgcgatgggtgcgccagtgccacagcccgcgtggtcgccggcatgg
aaggccaccagcgcaccgccgcccgagcccgaccgcggcacgcccatcaagagcggcatg
gcggtgttccacaacaagttcggcgagggcaaggtgctggctgtggagggcgcgggcgat
gacgcgcgcgcgcaggtgagcttcccgcgccacggcaccaagtggctggcgctcagcgtg
gccaagctcacgccgatcgaataa
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