Hydrogenophaga sp. PBC: Q5W_10240
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Entry
Q5W_10240 CDS
T04491
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Q5W_10240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyb03021
]
Q5W_10240
Transcription machinery [BR:
hyb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Q5W_10240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
At4g18257_C
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AOS79312
LinkDB
All DBs
Position
complement(2172029..2172547)
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AA seq
172 aa
AA seq
DB search
MSAADLSLREAVQTLYSHHHGWLYGWLRRKLGCPHRAADVAHDTFERVLAARDALCGVEQ
PRAWLTTTASRLIIDEARRERLRQAYLAELAPLMDAHEGHPSPEQILTALQALEQLSAVL
EAVSPKAREAFVRHYLDGETIATVAAGLGVSTRMVGKYLAQVLVRCAHLGAP
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgccgccgacctcagcctgcgcgaggcagtccagacgctctacagccaccaccac
ggttggctgtacggctggctgcggcgcaagctcggctgcccgcaccgcgcagccgacgtg
gcgcacgacaccttcgagcgcgtgctggccgcgcgcgacgcgctgtgcggcgtggagcag
ccacgcgcctggctcaccacgacggcgagccggctgatcatcgacgaggcccggcgcgag
cgcctgcgccaggcctacctggccgagctggcgccgctgatggacgcgcacgaaggccat
ccttcgcccgagcagatcctgaccgcgcttcaggcgctggagcagttgagcgccgtgctg
gaagcggtatcgcccaaggcccgcgaggccttcgtgcgccactacctggatggcgagacc
atcgccaccgtggcggccgggctgggggtgtccacgcgcatggtcggcaagtacctggcg
caggtgctggtgcgctgcgcgcacctgggcgccccatga
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