KEGG   Hydrogenophaga sp. PBC: Q5W_10240
Entry
Q5W_10240         CDS       T04491                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
hyb  Hydrogenophaga sp. PBC
Pathway
hyb02020  Two-component system
Brite
KEGG Orthology (KO) [BR:hyb00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Q5W_10240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hyb03021]
    Q5W_10240
Transcription machinery [BR:hyb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Q5W_10240
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_ECF Sigma70_r4 At4g18257_C HTH_23
Other DBs
NCBI-ProteinID: AOS79312
LinkDB
Position
complement(2172029..2172547)
AA seq 172 aa
MSAADLSLREAVQTLYSHHHGWLYGWLRRKLGCPHRAADVAHDTFERVLAARDALCGVEQ
PRAWLTTTASRLIIDEARRERLRQAYLAELAPLMDAHEGHPSPEQILTALQALEQLSAVL
EAVSPKAREAFVRHYLDGETIATVAAGLGVSTRMVGKYLAQVLVRCAHLGAP
NT seq 519 nt   +upstreamnt  +downstreamnt
gtgtccgccgccgacctcagcctgcgcgaggcagtccagacgctctacagccaccaccac
ggttggctgtacggctggctgcggcgcaagctcggctgcccgcaccgcgcagccgacgtg
gcgcacgacaccttcgagcgcgtgctggccgcgcgcgacgcgctgtgcggcgtggagcag
ccacgcgcctggctcaccacgacggcgagccggctgatcatcgacgaggcccggcgcgag
cgcctgcgccaggcctacctggccgagctggcgccgctgatggacgcgcacgaaggccat
ccttcgcccgagcagatcctgaccgcgcttcaggcgctggagcagttgagcgccgtgctg
gaagcggtatcgcccaaggcccgcgaggccttcgtgcgccactacctggatggcgagacc
atcgccaccgtggcggccgggctgggggtgtccacgcgcatggtcggcaagtacctggcg
caggtgctggtgcgctgcgcgcacctgggcgccccatga

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