Hydrogenophaga sp. PBC: Q5W_12080
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Entry
Q5W_12080 CDS
T04491
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q5W_12080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyb03019
]
Q5W_12080
03016 Transfer RNA biogenesis [BR:
hyb03016
]
Q5W_12080
Enzymes [BR:
hyb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Q5W_12080
Messenger RNA biogenesis [BR:
hyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q5W_12080
Transfer RNA biogenesis [BR:
hyb03016
]
Prokaryotic type
tRNA degradation factors
Q5W_12080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AOS79653
LinkDB
All DBs
Position
complement(2566471..2568717)
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AA seq
748 aa
AA seq
DB search
MSDKNNLLAEFEGVVSGHRDGHGFVVRDDGQPDIYLPSNEMRAVLHKDRVMARIVRLDRK
GRPEGRVTEIIERSNAPIIGRLLQEGGVWLVAPEDKRYGQDVLIPKGATGSAKPGQVVVV
ELTEPPALYGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSQTAMAQARALPDHVRP
ADLRHRVDLRDVPLVTIDGEDARDFDDAVYCEPAKVGKAKGWRLLVAIADVSHYVQTGSP
IDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVERLCMVCDMLINARGEIHAYQFY
PAVMFSHARFTYTEVAAILQNTRGPEAMNRKPLVPYLLNLHDVYRALLSARNARGAVDFE
TVETQIVCDESGRIERIVPRTRNDAHKLIEEAMLAANVCSAEFIEQGKHPGLFRVHEGPT
PEKLETLRNYLKAMGVNASLSDEPKPGEFQQIAKATQERPESQQIHTMLLRSMQQAIYTP
INSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILHKQKYQLPALPTPGEAHAKLSKRL
ASRVKPPAPNARKPSADTLAWQAAGLHCSANERRADEASRDVEAWLKCKYMREHLGEVFS
GVVTAVTSFGIFVTLDAMYVEGLVHITELGGEYFRFDEARQELRGERTGIRYALGSRVQV
QVSRVDLDGRRIDFRLVSGDDDVVLKAMRDKSGGEGGAASARQDRRGGKSRPPAPMPELK
AAVRRAAGKKAAPKAARATQSKSRRGKR
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgataaaaacaacctcctcgccgaattcgaaggcgtcgtctccggacaccgcgac
ggacacggcttcgtggtccgggacgatggacagcccgacatctaccttccttccaacgaa
atgcgcgctgtcctgcacaaggaccgcgtgatggcgcgcatcgtgcggctcgaccgcaag
gggcgccccgaaggccgcgtcaccgaaatcatcgagcggtccaatgcgcccatcatcggg
cggctgttgcaggaaggcggcgtgtggctcgtggcgcccgaagacaagcgctacggccag
gatgtgctgattcccaaaggcgccacgggctcggccaagccgggccaggtggtggtggtg
gaacttacggagccgcccgcgctgtatggccagcctgtggggcgcgtgaaggaggtgctc
ggcgagatcgacgacccgggcatggagatcgagatcgcggtgcgcaagtacggcgtgccg
cacgagttttcgcagaccgccatggcgcaggcgcgggccttgcctgatcacgtgcgcccc
gccgacctgcgccaccgcgtagacctgcgcgacgtgccgctggtgaccatcgacggcgag
gacgcgcgcgacttcgacgacgccgtgtactgcgagcctgccaaggtgggcaaggccaag
ggctggcgcctgttggtggcgattgccgacgtgagccactacgtgcagaccggctcgccg
atcgatgtcgacgcctacgaccgcgcgacctcggtctacttcccgcgccgggtgatcccc
atgctgccggagaaactgtccaacggcctgtgctcgctcaaccccggggtggagcgcctg
tgcatggtgtgcgacatgctcatcaacgcacgcggcgagatccacgcctaccagttctac
cctgcggtgatgttcagccacgcgcgcttcacctacaccgaggtggcggccatcctgcag
aacacgcgcggccccgaggccatgaaccgcaagccgctggtgccgtacctgctgaacctg
cacgacgtgtaccgcgccctgctgtcggcacgcaatgcgcgcggcgcggtggacttcgag
acggttgagacgcaaatcgtctgcgacgagtcgggtcgcatcgaacgcatcgtgccgcgc
acgcgcaacgatgcgcacaagctgatcgaggaggccatgctcgcggccaacgtatgctcg
gccgagttcatcgagcagggcaagcacccgggcctgttccgggtgcacgaaggccccacg
cccgagaagctggagacgctgcgcaactacctcaaggccatgggcgtgaatgcgtcgctc
agcgacgagcccaagcctggcgagttccagcagatcgcaaaggcgacgcaggagcggccg
gaatcgcagcagatccacaccatgctgctgcgctccatgcagcaggccatttacacgccg
atcaacagcgggcacttcggcctggccttcgaagcctacacgcacttcaccagcccgatc
cggcgctaccccgatctgctggtgcaccgcgtgatcaaggcgattctgcacaaacagaag
taccagttgcccgcgctgccgacgccgggcgaggcgcacgccaagctcagcaagcgactg
gccagccgcgtcaagccgcccgcacccaacgcccgcaagccctcggccgacaccctggcc
tggcaggccgcgggtctgcactgcagcgccaacgagcgccgcgcggacgaggccagccgc
gacgtggaggcctggctcaagtgcaaatacatgcgcgagcacctgggcgaggtgttctcg
ggcgtggtcactgcggtcacgagcttcggcatcttcgtcaccctggacgcgatgtacgtc
gaaggcctggtgcacatcaccgagctgggcggcgagtacttccgcttcgacgaagcgcgc
caggagttgcgcggtgagcgcacgggcattcgctacgcactgggttcgcgcgtgcaggtg
caggtcagccgcgtcgatctggacggccgccgcatcgacttccgtctggtgagcggggac
gacgatgtggtgctcaaggccatgcgcgacaagagcgggggggagggcggtgcggcttcg
gcgcgccaggacaggcgagggggcaagtcgcgcccgcccgcgcccatgccggagttgaag
gccgcggtgcgccgcgccgctggcaagaaggcggcccccaaggccgcgcgcgcgacgcaa
tcgaagtcacggcggggcaagcgatga
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