Hydrogenophaga sp. PBC: Q5W_12675
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Entry
Q5W_12675 CDS
T04491
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hyb
Hydrogenophaga sp. PBC
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyb03019
]
Q5W_12675
Enzymes [BR:
hyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Q5W_12675
Messenger RNA biogenesis [BR:
hyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Q5W_12675
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
NACHT
AAA_22
WHD_HA2
AAA_19
AAA_25
nSTAND3
T2SSE
AAA_23
nSTAND_NTPase5
AAA_30
Cas3-like_C_2
SRP54
PhoH
FtsK_SpoIIIE
ABC_tran
CheZ
Motif
Other DBs
NCBI-ProteinID:
AOS79757
LinkDB
All DBs
Position
complement(2685141..2689028)
Genome browser
AA seq
1295 aa
AA seq
DB search
MPTPALHLEFPDALPVSARRHEIEAAIREHQVVIVCGETGSGKTTQLPKIALAMGRGKLN
AQPGERGRLIGHTQPRRIAASSVAKRIAEELKTPLGDVVGYKVRFQDRLSREASVKLMTD
GILLAETQTDPDLSAYDTIIIDEAHERSLNIDFLLGYLRQLLPRRPDLKLIVTSATIDAD
RFAEYFSSSKGPAPVLMVSGRTYPVEVRWRPFEESREYDLNDAIADGVDELWRGGQGGDV
LVFLPGEREIREAADHLRKHLAHQPLHRNAEVLPLFARLSQAEQDRIFQPHGQRRIVLAT
NVAETSLTVPGIRYVIDAGTARVKRYSFRQKVEQLQIEPISQAAANQRAGRCGRVADGIC
IRLYDEADFNGRARFTDPEILRSSLAGVILRMKALRLGAVEDFAFVDAPQRRAIADGYQL
LAELGAVDDDNELTAIGQSLSRLPLDPRVGRMILAARDQNALDEVLVIASALSVQDVRDR
PIDKQAQADQAHAKFDDEKSEFTGTLKLWKWLDDSRGGHGQDHKLSHRQYENLLRENFIN
VRRVREWRDTHSQLHTVVGEQGWKLNATPASYEQLHCAMLGGLLGNIGCKSETEDWYLGA
RGIKFHRHPGAHLSKKPGRWVVCAELVETTRLFGRGIAAIEPAWLERVGAHLLKKQLLDP
HWEKKAARVSALERATLYGLVIYHNRRADYGRIDPEGARAIFIREALVQGEWDTKLPFLA
ANRKLVRQVTELEHKSRRQDVLVDDEVIYAWYDEQIPPDLSSGAAFERWYAQAARENPKL
LFLTREDLMRHEAAGITAQAFPRTVRLGGVDCAASYLHEPGDARDGLSVTVPIYALNQVS
EERCDWLVPGMLKDKVLALLKTLHQRPRSRLVPLPATAERFTEALCVPETFAQGNFVDAV
LKLVRAATQLDIVRNDLKPDQLPPHHFMHLRVVDEHGRQLGQGRNLGALKAELGSQARGA
FQALAALKTTSAPAPTPSVPVSPASPSGPAVRVPKAAPPPAAPAVDASQRHTRWDFGELP
ELLEIRRGGQTLIGFPALVDDGDAVRLEVFDEPDLAQARHREGLRRLVALQIKDALKYLE
KNIAGLQAMGAAFMAVDKERGGGTLEELRTQIIELALDRAFLQEPLPADAKAFDQRVADG
RGRLNLIAAEIARAAGATLTEFAAAQRKLKDAKPPADVAADVAQQLQRLVTRRFLVETPH
AQLQHLPRYLKAVQLRLDKLRADPARDAAKLAELKPQDQRYWRLVAERKGVQDARLQELR
WLLEELRVSFFAQELRTPQPVSLKRLDKSWAQLNA
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
ttgcccacgcccgccctgcacctggagttccccgacgcgctgcccgtgtcggcgcgccga
cacgagatcgaggcggcgatccgcgagcaccaggtggtcatcgtctgcggcgagaccggc
tcgggcaagaccacgcaactgcccaagatcgcgctggccatggggcgcggcaagctgaac
gcgcagccgggcgagcgcggccgcctgatcggccacacgcagccgcgtcgcatcgccgcg
agttcggtggccaagcgcatcgccgaggagctcaagacgccgctgggcgacgtggtgggc
tacaaggtgcgcttccaggacaggctctcgcgcgaagcctcggtcaagctgatgaccgac
ggcatcctgcttgccgagacgcagaccgacccggacctgagcgcctacgacacgatcatc
atcgacgaggcgcacgagcgcagcctcaacatcgactttctgctcggctacctgcgccag
ttgctgccgcgccgacccgacctcaagctcatcgtcacctcggccaccatcgacgccgac
cgcttcgccgagtacttctcgtcgtcgaaggggccggcgccggtgctcatggtgtcgggg
cgcacgtatcccgtcgaggtgcgttggcggccgttcgaggaaagccgcgagtacgacctg
aacgacgccatcgccgatggcgttgacgagctgtggcggggcggccagggcggcgatgtg
ctcgtcttcctgccgggtgagcgcgagatccgcgaggccgccgaccacctgcgcaagcac
ctggcccaccagccgctgcaccgcaacgccgaggtgctgcccctgttcgcgcgcctctcc
caggccgaacaggaccgcatcttccagccgcacgggcagcgccgcattgtgctggccacc
aacgtggccgaaacctcgctcaccgtgcccggcatccgctacgtcatcgacgccggcact
gcgcgcgtcaagcgttacagcttccgccagaaggtggaacagttgcagatcgagcccatc
agccaggcggcggccaaccagcgcgcgggccgctgcgggcgcgtggctgatggcatctgc
atccgcctgtacgacgaggctgatttcaacggccgcgcgcgcttcaccgacccggagatc
ctgcgcagctcgctcgcgggcgtgatcctgcgcatgaaggcgctgcgcctgggcgcggtg
gaggacttcgccttcgtcgacgcaccgcagcgtcgcgcgatcgccgacggctaccaattg
ctcgccgaactcggcgcggtggatgacgacaacgagctcacggccatcggccagtcgctg
tcgcgcctgccgctggacccgcgcgtgggccgcatgatcctggccgcgcgcgaccagaat
gcgctcgacgaggtgttggtcatcgcctcggccctgagtgtgcaggacgtgcgagaccgc
cccatcgacaagcaggcgcaggccgatcaggcgcacgccaagttcgatgacgaaaagagc
gagttcacgggcacgctcaagctctggaagtggctggacgacagtcgaggcggccatggc
caggaccacaagctcagccaccgccagtacgaaaacctgctgcgcgagaacttcatcaac
gtgcgccgcgtgcgcgaatggcgcgacacgcatagccagttgcacaccgtggtgggcgag
cagggctggaagctcaacgccacgcccgccagttacgagcaactgcactgcgccatgctc
ggcggcctgctcggcaacatcggctgcaagagcgaaacggaagattggtacctcggcgca
cgcggcatcaagttccaccgccacccgggcgcgcacctgagcaagaagcccgggcgctgg
gtcgtctgcgccgaactggtggagaccacgcgcctgttcgggcgcggcatcgcggccatc
gagcccgcttggctggagcgcgtgggcgcgcacctgctcaagaagcaactgctcgatccg
cactgggagaagaaggccgcgcgcgtctcggcactggagcgcgccacgctctacggtttg
gtcatttatcacaaccgtcgcgccgactacggtcgcatcgacccggagggtgcgcgcgcc
atcttcatccgcgaagccttggtgcagggcgagtgggacacgaagctgcctttcctcgcc
gccaaccgcaagctcgtgcgtcaggtgacggagctggagcacaagtcgcgccggcaggac
gtgctggtggacgacgaggtgatctatgcctggtatgacgaacagatcccgcccgacctg
agcagcggcgccgctttcgagcgctggtacgcccaggccgcgcgcgagaaccccaagctg
ctgttcctcacgcgcgaggacctgatgcgccacgaggccgccggcatcacggcccaggcc
tttccgcgcaccgtgcgcctgggtggcgtggactgcgccgccagctacctgcacgagccc
ggcgatgcgcgcgacggtctctcggtcacggtgccgatctacgcgctgaaccaggtgagc
gaggagcgctgcgactggctggtgcccggcatgttgaaggacaaggtgctggcgctgctc
aagacgctgcaccagcgcccgcgctcgcggctggtgccgctgccggccacggccgagcgt
ttcaccgaggcgctgtgcgtgcctgaaaccttcgcgcagggaaactttgtcgatgcggtg
ctcaagctggtgcgcgcggccacgcagctcgacatcgtgcgcaacgacctcaagcccgat
caactgccgccgcaccacttcatgcacctgcgcgtggtggacgagcacgggcggcaactg
gggcaggggcgcaacctgggcgcgctcaaggccgagctgggctcgcaggcgcgcggcgcg
ttccaggcgctggcggcgctcaagaccaccagtgccccggcgcccacgccatccgtaccc
gtgtcaccggcgagcccgagcggcccggccgtgcgggtaccgaaagccgcgccgcccccc
gccgcaccggcggtggacgcgagccagcgccacacccgctgggacttcggcgagttgccc
gagttgctggagatccgccgcggcggccagacgctgatcggctttcccgcgctggtggac
gacggcgatgccgtacgcctcgaggtcttcgacgagcccgacctggcccaggctcgccac
cgcgagggcctgcgccggctggtggcgctgcagatcaaggacgcgctgaagtacctcgag
aagaacatcgccggcctgcaggccatgggcgcggctttcatggccgtggacaaggaacgc
ggcggcggcacgctggaagagttgcgcacgcagatcatcgagctcgcgctcgaccgcgcc
ttcctgcaggagcccttgccggccgacgccaaggccttcgatcagcgcgtggccgacggg
cgcgggcgtctgaacctcatcgcggccgagatcgcgcgcgcggccggcgccaccctcacc
gagttcgccgccgcgcagcgcaagctcaaggacgccaagccgcccgcggacgtggcggcc
gacgtggcgcagcagttgcagcgactggtgacgaggcgcttcctggtggagacgccgcac
gcgcagttgcagcacctgccgcgctacctcaaggcggtgcaactgcggctggacaagctg
cgcgccgaccccgcgcgcgacgccgcgaagctggccgaactcaagccccaggaccagcgc
tactggcgcctggtggccgaacgcaaaggcgtgcaagacgcgcgtctgcaggaactgcgc
tggctgctggaggaactgcgcgtgagcttcttcgcgcaggaactgcgcacgccgcagccg
gtgagcctgaagcggctggacaagagctgggcacaactcaacgcctga
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