KEGG   Hydrogenophaga sp. PBC: Q5W_13185
Entry
Q5W_13185         CDS       T04491                                 
Name
(GenBank) DNA-binding protein HU
  KO
K03530  DNA-binding protein HU-beta
Organism
hyb  Hydrogenophaga sp. PBC
Brite
KEGG Orthology (KO) [BR:hyb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hyb03032]
    Q5W_13185
   03036 Chromosome and associated proteins [BR:hyb03036]
    Q5W_13185
   03400 DNA repair and recombination proteins [BR:hyb03400]
    Q5W_13185
DNA replication proteins [BR:hyb03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    Q5W_13185
Chromosome and associated proteins [BR:hyb03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    Q5W_13185
DNA repair and recombination proteins [BR:hyb03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      Q5W_13185
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 ALF HU-CCDC81_euk_2 HU-CCDC81_euk_1
Other DBs
NCBI-ProteinID: AOS79849
LinkDB
Position
complement(2784240..2784512)
AA seq 90 aa
MNKTELVEHIAKHADISKAAATRALDSTIAAIRTTLKKGGTVSLVGFGSFAVSKRPARKG
RNPRTGAEIKIKAAKVPKFRPGKALKDAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
gtgaacaagaccgaactcgtcgaacacatcgccaagcacgccgacatctccaaggccgcc
gcgacacgtgcactcgactccaccatcgccgccatccgcaccacgctcaagaagggcggc
accgtttccctggtgggcttcggctcgttcgccgtgagcaagcgccccgcccgcaagggc
cgcaacccgcgcacgggcgccgagattaaaatcaaggccgccaaagtgccgaagttccgc
cccggcaaggcactgaaggacgcggtcaactga

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