Hydrogenophaga sp. PBC: Q5W_14345
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Entry
Q5W_14345 CDS
T04491
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q5W_14345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyb03019
]
Q5W_14345
Enzymes [BR:
hyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q5W_14345
Messenger RNA biogenesis [BR:
hyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q5W_14345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOS80062
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All DBs
Position
3045881..3047665
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AA seq
594 aa
AA seq
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MTFEELNLAPAIVQAVHEHGYHTPTPIQVEAVPAVLAGRALLAGAQTGTGKTAAFTLPLL
QRLSQGQRPKNRFGGIGIRALVLTPTRELAAQVEESVRVYGKHVDLSSTVVFGGVGMNPQ
IDAMKRGVDILVATPGRLLDLQQQGFLDLSNVQILVLDEADRMLDMGFIHDVKKVLALLP
QSKQSLLFSATFSDEIRDLAQGLLKDPQHIQVTPRNTTVQRITQVIHPVGRGKKKALLVY
IIQLHNWSQVLVFTRTKFGANNVADYLNKNGITAMALHGNKSQGARTQALAGFKSGEIRA
LVATDIAARGIDIDELPHVVNYDIPNICEDYVHRIGRTGRAGREGQAVNLVSLDEEGFMM
EIERFTKQQIPVEMFAEYMPEPGEKAEPIAMGRQTIWGGAGKPPSREVMAAAAKAARQEM
VQRIREKKGNEGQGQGQGRGQGDGQPRGGQGQKARGPRPQGGGQGNNSGQFSNGPGNGQQ
RQRPPRGDRPPRGDRPPRADRPPRADRPPRMEGEEGHERQPGPNAHLGSLRIRDPRPRQA
NPNGQPDPLRTGIDAMRTGNRGKNRNKKGGGGGGQRGEGNVDPLRTNYGRIGNN
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgaagaactgaacctggccccggccatcgtgcaagccgtgcatgagcacggc
tatcacacgcccacccccatccaggtcgaggccgtcccggctgtcctggcggggcgcgcc
ctgctcgccggcgcccagaccggcaccggcaagaccgctgccttcacgctgcccctgctg
cagcgactctcgcagggccagcggccgaagaaccgcttcggcggcatcggcatccgcgcc
ctggtgctcacccccacgcgcgaactcgccgcccaggtcgaggaatcggtccgggtctac
ggcaagcacgtcgatctgtcgtccaccgtggtgttcggcggcgtgggcatgaacccgcag
atcgacgccatgaagcgcggcgtggacatcctggtggccacgccaggccgcctgctcgac
ctgcagcagcaaggcttcctggacctgtcgaacgtgcagatcctcgtactcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaaagtgcttgccctgctgccg
cagagcaagcaaagcctgctgttctccgccaccttcagcgacgagatccgcgatctggcg
caaggtctgctcaaggacccgcagcacattcaggtgacgccgcgcaacaccacggtgcag
cgcatcacccaggtcatccaccccgtgggccgtggcaagaagaaggccctgctggtctac
atcatccagttgcacaactggagccaggtgctggtgttcacgcgcaccaagttcggcgcc
aacaacgtggccgactacctgaacaagaacggcatcaccgcgatggcgctgcatggcaac
aagagccagggtgcccgcacgcaggcgctggccggcttcaagagcggcgagattcgcgcc
ctggtggccaccgacatcgccgcgcgcggcatcgacatcgatgagctgccgcacgtcgtc
aactacgacatccccaacatctgcgaagactacgtgcaccgcatcggccgcacgggccgc
gcgggccgcgaaggccaggcggtcaacctcgtcagcctggacgaggaaggcttcatgatg
gagatcgagcgcttcaccaagcagcagatcccggtggagatgttcgccgagtacatgccc
gagcccggcgagaaagccgagcccatcgccatgggccgccagaccatctggggcggcgcg
ggcaagccgcccagccgcgaggtgatggccgccgccgccaaggccgctcgccaggaaatg
gtgcagcgcatccgcgagaagaagggcaacgaaggccagggccagggccaaggccgtgga
caaggcgatggccagccgcgcggcggccagggccagaaggcccggggcccgcgtcctcag
ggcggtggccagggcaacaatagcggccagttcagcaacggcccgggcaatggccagcag
cgccagcgccccccgcgcggcgaccgtccgccacgcggcgaccgtccgccccgcgccgat
cgtccgccgcgcgccgaccgcccgccgcgcatggagggcgaggaaggccatgagcgccag
ccggggcccaacgcccacctgggcagcctgcgcatccgagacccccggccgcgccaggcc
aacccgaacggccagcccgatccgctgcgcaccggcatcgatgccatgcgcaccggcaac
cgcggcaagaaccgcaacaagaagggcggcggcggtggcggtcagcgcggtgagggcaac
gtcgacccgctgcgcaccaactacggccgcatcgggaacaactag
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