Hydrogenophaga sp. PBC: Q5W_15520
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Entry
Q5W_15520 CDS
T04491
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Q5W_15520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_15520
Enzymes [BR:
hyb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Q5W_15520
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Q5W_15520
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Q5W_15520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AOS80278
LinkDB
All DBs
Position
complement(3281618..3282433)
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRRSFADRIAGGTVRGVALGKPLRWPLGVEPDALVGQCVRSVGRRGKYLLM
ELDGGWLLLHLGMSGSLQFAPVLPPAGPHDHFELDTSRGRLRLHDPRRFGAVVHVPSLDH
PRAVRLLGGLGVEPLEAGFDPVRFHQALRLRRAPIKQVLLAGDIVVGVGNIYASEALFRA
GIRPTTRADRISGPRAARLHGAIVDVLQRALALGGSTLRDFLSAEGQSGYFQLDAMVYDR
AGQPCRQCTTAIRTIRQGQRSTYFCPLCQAR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaattgcccgaagtcgaggtcacccgacgcagctttgccgaccgcatcgccggg
gggacggtgcgcggcgtggcgctgggcaagccactgcgctggccgctgggtgtcgagccc
gacgcgctggtcggccagtgcgtgcgctcggtcggtcggcgaggcaagtacctgctgatg
gaactggacgggggttggttgctgctgcacctgggcatgtcgggcagcctgcaattcgcg
ccggtgctgccgcccgccggcccgcatgaccacttcgaactcgacaccagccgggggcgg
ctgcgcctgcacgatccccgtcgcttcggtgcggtggtgcatgttccgtcgctcgatcac
ccacgtgccgtgcgcttgctgggcggcctgggcgtggagccgctggaggcgggcttcgat
ccggtgcgttttcaccaggccttgcgcctgcggcgtgcgcccatcaagcaggtgctgctg
gccggcgacatcgtggtgggcgtgggcaacatctacgccagcgaggcgctgtttcgcgcc
ggtatccgccccaccacgcgggccgaccgcatcagcggtccgcgcgccgcgcgcttgcat
ggcgccatcgtggacgtgttgcagcgcgcgctggcactgggcggcagcacgcttcgcgat
ttcttgagcgccgaagggcagagcggctatttccagctcgacgccatggtgtacgaccgc
gccggccagccctgccggcagtgcaccacggcgatccgcaccattcggcaaggtcaacgt
tcgacctacttctgcccgctctgccaggcccgttga
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