Hydrogenophaga sp. PBC: Q5W_15665
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Entry
Q5W_15665 CDS
T04491
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03410
Base excision repair
hyb03430
Mismatch repair
hyb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Q5W_15665
03430 Mismatch repair
Q5W_15665
03440 Homologous recombination
Q5W_15665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_15665
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Q5W_15665
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Q5W_15665
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q5W_15665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
SurA_N
LON_substr_bdg
Motif
Other DBs
NCBI-ProteinID:
AOS80304
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Position
3304550..3306271
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AA seq
573 aa
AA seq
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MKIITRDVPPRAAWALEQAGLHPLLARLFAARGVTTSDELDDALGRLLPPDTMTGAREAA
RQLADAMAAKQRICIVADYDCDGATACAVGVRGLKLLGAPLGFDSVGYLVPDRVVDGYGL
TPAIARRVKDSGADVLITVDNGIASVEGVRTAHELGLRVIVTDHHLPGPQLPADCVIVNP
NQPGCAFESKSIAGVGVMFYVLLALRAELRERGVFDAKNQPRIDALLPLVALGTVADVVK
LDGNNRRLVAQGLKRVRAGALPAGMAALFGAAGRRVEAASGFDFGFALGPRLNAAGRLAD
MTLGIECLLTDDPARADELARTLDGINRERKVIEGEMREQALELAEAMFDEGEEPPPAMV
LFDPDFHEGVVGIVASRLKDKLHRPTFVFAASAAPGKEHELKGSGRSIPGFHLRDALDLV
AKRHPGVLLRFGGHAMAAGCTIDEEHLDTFEQALQQVAHEWLDAATLQRRLEADGVLDRQ
YRRPDLVDVLQSHVWGQGFAPPVFCEEVRVVSQRIVGEKHLALKLQHQGDAVDGIWFGHT
EPLPERVKIAFRLELDEWQGQRRVRFLVEAAEI
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcatcacccgcgacgtccccccgcgcgccgcctgggcgctcgaacaggccggc
ctgcacccgctgctggcgcgcctgttcgccgcgcgcggcgtcaccaccagcgacgaactc
gacgacgcgctcgggcgcctgctgccgcccgacaccatgaccggcgcgcgcgaggccgcg
cggcaactggccgacgccatggccgcgaagcagcgcatctgcatcgtggccgactacgac
tgcgacggcgccaccgcctgcgccgtgggcgtgcgcggcctcaagctgctcggcgcgccg
ctgggcttcgacagcgtgggctacctcgtgcccgaccgcgtcgtcgacggctacggcctc
acgcccgccatcgcgcggcgcgtcaaggacagcggcgccgacgtgctgatcaccgtggac
aacggcatcgccagcgtcgaaggcgtgcgcacggcacacgagctgggcctgcgcgtcatc
gtcaccgaccaccacctgcccggcccgcaactgccggccgactgcgtcatcgtcaacccc
aaccagcccggctgcgcgttcgagagcaagagcatcgccggcgtgggcgtgatgttctac
gtgctgctggcgctgcgcgcggagctgcgcgagcgtggtgtgttcgatgcgaagaaccag
ccgcgcatcgacgcgctactgcccctcgtggctctcggcaccgtagccgacgtggtgaag
ctcgacggcaacaaccggcgcctcgtcgcgcagggcctgaagcgcgtgcgcgcgggcgcc
ttgccggccggcatggccgccctgttcggggccgcgggccggcgcgtggaggccgccagc
ggtttcgacttcggcttcgccctgggcccgcgcctgaacgcggcgggccggctggccgac
atgacgctgggcatcgaatgcctgctcaccgacgaccctgcgcgcgccgacgagttggcg
cgcacgctcgatggcatcaaccgcgagcgcaaggtcatcgagggcgagatgcgcgagcag
gcgctggaactggcagaggccatgttcgacgagggcgaagaaccgccgcccgccatggtg
ctgttcgaccccgacttccacgagggcgtggtcggcatcgtggcctcgcgtctgaaggac
aagctgcaccggcccaccttcgtcttcgccgccagcgcggcaccgggcaaggagcacgaa
ctcaagggctcgggccgctccatcccgggttttcacctgcgcgacgcgctggacctggtg
gccaagcgccacccgggcgtgctgctgcgcttcggcggccacgccatggcggcgggctgc
accatcgacgaggagcacctggacaccttcgagcaggccttgcagcaggtggcgcacgag
tggctggacgctgccacgctgcagcgccgcctggaggccgatggcgtgttggaccggcag
taccggcgacccgacctggtggacgtgctgcagtcgcacgtctggggccagggctttgcg
ccaccggtgttctgcgaggaggtgcgggtggtgagccagcgcatcgtgggcgagaagcac
ctggcgctcaaattgcagcaccagggggatgcggtggacggcatctggttcgggcacacc
gagccactgccggagcgggtgaagatcgcgttccggctggaactggacgagtggcagggg
cagcggcgggtgcggtttctggtcgaggcagcggagatctga
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