Hydrogenophaga sp. PBC: Q5W_22105
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Entry
Q5W_22105 CDS
T04491
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q5W_22105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyb03019
]
Q5W_22105
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_22105
Enzymes [BR:
hyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q5W_22105
Messenger RNA biogenesis [BR:
hyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q5W_22105
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Q5W_22105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
SecA_DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOS81452
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All DBs
Position
4645688..4647580
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AA seq
630 aa
AA seq
DB search
MIDVAAGAETLEACVDVLQSVFGYEAFRGPQAQIVTHVCEGGDALVLMPTGGGKSLCYQV
PAIVRAQGGRGVAVVVSPLIALMHDQVGALTEAGVSAAYLNSSLSLEDAQRIELQLRRGD
LTLLYVAPERLLTPRCQAMLESLHEQGRLSLFAIDEAHCVSQWGHDFRPEYRELAVLPER
FVGVPRIALTATADALTRADIVERLQLQDARTFISSFDRPNIRYQLVEKKDATAQLQRFI
RDEHANAQGHDAGVVYCQSRRRVEEVAQMLQQAGFKALPYHAGLDAAVRQNHQDRFLREE
GLIMVATIAFGMGIDKPDVRFVAHLDMPKNIEGYYQETGRAGRDGEPANAWMAYGLQDVV
NQRRMIDDSPAPDEFKQVLRGKLDALLALAEASDCRRVRLLRYFGEESQPCGNCDNCLNP
PELFDATEPARKLLSCIYRVQQASGHGYGAGHIMDILRGKATEKVEANGHQRLSTFGIGA
DWSETQWRALLRQLIAIEAVRVDDAPYNTLHLSDGARAILKGEGEVRLRIQAERAPSRSR
SARAKPPVGDDGTPLSLAERDCLDALKTWRAGVAKEHNLPAYVIFHDATLRAIAQRRPTD
VTDLDGISGIGQKKRTAYGDDVIQVVSAFL
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcgcggccggggccgagacgctggaggcctgcgtcgacgtcctgcagtcg
gtcttcggctacgaggcctttcgcggcccgcaggcgcagatcgtcacgcacgtgtgcgag
ggcggcgacgcgctggtgctgatgcccaccggcggcggcaagtcgctgtgctaccaggtg
ccggccatcgttcgcgcgcagggcgggcggggcgtggcggtggtggtctcgccgctgatc
gcgctgatgcacgaccaggtgggcgcactcacagaggccggcgtgagcgcggcctacctg
aacagcagcctctcgctggaagatgcgcagcgcatcgaactgcaactgcgccggggcgat
ctcaccctgctctatgtggcgcccgaacggttgctcacgccgcgttgccaggccatgctg
gagagcctgcacgagcaggggcgcctgtcgctgttcgccatcgacgaggcgcactgcgtg
agccagtggggccacgatttccgccccgagtaccgcgagctcgccgtgctgcccgagcgc
ttcgtgggtgtgccgcgcattgcgctcaccgccacggccgacgcgctcacgcgcgccgac
atcgtcgagcgcctgcaattgcaggacgcgcgcaccttcatcagcagcttcgaccggccc
aacatccgctaccagctcgtcgagaagaaggacgccacggcacagttgcagcgcttcatc
cgcgacgagcatgccaacgcccagggccacgacgcgggcgtggtgtattgccagtcgcgc
cgccgcgtggaagaagttgcgcagatgctgcagcaggccggcttcaaggccctgccctac
cacgccggcctggacgccgctgtgcgccagaaccaccaggaccgcttcctgcgcgaagag
ggcctgatcatggtggccaccatcgccttcggcatgggcatcgacaagcccgacgtgcgc
ttcgtggcccacctggacatgcccaagaacatcgagggctactaccaggagaccggccgc
gcgggccgcgacggcgagcccgccaacgcctggatggcctacggcctgcaggatgtggtg
aaccagcgccgcatgatcgacgacagccccgcgcccgacgagttcaagcaggtgctgcgc
ggcaagctcgacgcccttctggccctggccgaggcgagtgactgccgccgcgtgcgctta
ctgcgctacttcggcgaagagagccagccttgcgggaattgcgacaactgcctgaacccg
cccgagctgttcgacgccaccgagcccgcgcgcaagctgctctcttgcatctaccgcgtg
caacaggccagcggccacgggtacggcgcgggccacatcatggacatcctgcgcggcaag
gccaccgagaaggtcgaggccaacggccaccagcggctcagcaccttcggcatcggcgcc
gactggagcgagacccagtggcgcgccctgctgcgccagctcatcgccatcgaggcggtc
cgcgtggacgacgcgccgtacaacaccctgcacctgagcgacggcgcccgcgccatcctc
aagggcgagggcgaggtgcgcctgcgcatccaggccgagcgcgcgccgtcccgttcgcgc
agcgcgcgcgccaagccgccagtgggggacgacggcacaccactgagcctggccgagcgc
gactgcctggacgcgctgaagacctggcgcgcgggcgtcgccaaggagcacaacctgccc
gcctatgtgatttttcacgacgcgaccctgcgcgccatcgcccagcgccggcccacggac
gtgacggatctggacggcatcagcggcatcgggcagaaaaagcgcacggcctacggcgac
gacgtcattcaggtggtgagtgcttttctctga
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