Hydrogenophaga sp. PAMC20947: E5678_00940
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Entry
E5678_00940 CDS
T05960
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
E5678_00940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyc03019
]
E5678_00940
03009 Ribosome biogenesis [BR:
hyc03009
]
E5678_00940
03036 Chromosome and associated proteins [BR:
hyc03036
]
E5678_00940
Enzymes [BR:
hyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
E5678_00940
Messenger RNA biogenesis [BR:
hyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E5678_00940
Ribosome biogenesis [BR:
hyc03009
]
Eukaryotic type
90S particles
RNase
E5678_00940
Prokaryotic type
rRNA processing factors
E5678_00940
Chromosome and associated proteins [BR:
hyc03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
E5678_00940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
ParE_toxin
Motif
Other DBs
NCBI-ProteinID:
QCB44731
LinkDB
All DBs
Position
210649..211344
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AA seq
231 aa
AA seq
DB search
MSPELQLLQQRLKHGFANPHLLERALTHRSFTSDHNERLEFLGDSVLNLAVSGLLFEKLS
QLPEGDLSRVRANLVKQDTLFQIASDLGLSGCLRLGDGEKRSGGHKRPSILADALEAVIG
AVYLDAGFDAAAALVHRLFSGFELSAQMSAMGKDPKTELQEWLQGRKMKLPVYRVVATLG
EAHKQTFDVECLVTETGHSERGIGASRRAGEQAAAAAMLLRIQPGSTGHRP
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcccgagctgcaattgcttcagcagcggctgaagcatgggtttgccaacccgcat
ttgctggaacgtgcactgacccatcgcagcttcacctctgaccacaacgagcgcctcgaa
ttcctgggggattcggtgctcaacctggcggtatcgggcctgttgtttgaaaagctgagc
cagttgcctgagggcgatctgtctcgtgtgcgggccaacctggtcaaacaggacactttg
ttccagatagcctccgaccttggcttgtcggggtgccttcgtttgggtgacggcgaaaag
cgctcaggtgggcacaagcgcccatccatcctggccgatgccctggaagccgtgatcggg
gcggtctacctggacgcgggattcgatgccgctgcggcgttggtgcaccgtttgttcagc
ggcttcgaactcagcgcccagatgagtgccatgggcaaagatcccaagaccgaattgcag
gagtggctgcaggggcgcaaaatgaagctgccggtgtatcgggtggttgcgacgctcggc
gaagcacacaaacagacgtttgacgtcgagtgcctggtcaccgaaacaggccacagtgag
cgcggcattggcgcatccaggcgtgctggggagcaggccgctgccgccgccatgttgctg
cgcatccagcccggttcgacaggtcatcggccttag
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