Hydrogenophaga sp. PAMC20947: E5678_02620
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Entry
E5678_02620 CDS
T05960
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03030
DNA replication
hyc03430
Mismatch repair
hyc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5678_02620 (dnaE)
03430 Mismatch repair
E5678_02620 (dnaE)
03440 Homologous recombination
E5678_02620 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyc03032
]
E5678_02620 (dnaE)
03400 DNA repair and recombination proteins [BR:
hyc03400
]
E5678_02620 (dnaE)
Enzymes [BR:
hyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E5678_02620 (dnaE)
DNA replication proteins [BR:
hyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E5678_02620 (dnaE)
DNA repair and recombination proteins [BR:
hyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E5678_02620 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QCB45020
UniProt:
A0A4P7R4V5
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All DBs
Position
568741..572307
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AA seq
1188 aa
AA seq
DB search
MFIHLRLHTEFSVVDGTNRIDEVVAAAAADGQPALAITDLNNLFGAVKFYKEARGKGVKP
LLGAEVLLQGFTEQTLNAMPGSHQPAAPKVILLVQDTQGYLNLCELLARAWTRTDGRGPA
VLQRAWLEELNGGLLMLAGAQAGPVGQALLQGDTQRAADVALQLSSLFTHRFYIEVQRAG
RPDDERHVTAAVQLAARLHLPVVATHPVQFLTEEDYEAHEARVCISDGEILGNRRRVRRF
TREQYFKSAEQMTALFADLPSAVANTLEIAKRCTLTLVLGKPQLPDFPTPLIDGVPMPMA
DFFRQSSFEGLEDRLVHLYPDATKRETERPRYVARLEFEINTILNMGFPGYFLIVGDFII
WAKKNGCPVGPGRGSGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQS
NRDRVIDYVKDKYGKNAVSQIATFGTMAARAAIRDVGRVLDFSYGFCDGISKLIPNKPGK
PITIQYPPPDVKDDDREKYAMLAEPMLAERIQKEEDVKTLIELAQKLEGMTRNIGMHAGG
VLIAPGKLTDFCPLYAQPGSDSAVSQYDKDDVEAVGLVKFDFLGLATLTILEIAREFIAT
RHKGQEDFCFENVPLDDARTYALFSRGQTEAVFQFESRGMQGMLRDAKPSRLEDLIALNA
LYRPGPMDLIPSFVARKHGREVIEYPHPLVANMLSETYGIMVYQEQVMQTAQILGGYSLG
GADMLRRAMGKKKAEEMAEHRTIFRAGAAKNGIDEKKADEIFDLMEKFAGYGFNKSHAAA
YSLLAYHTGWLKVHYAAEFFCANMTVEMDDTDKLKVLVDDAHKMGLSFEAPDVNRSFYRF
EPITDKAIRYGLGAIKGTGQLAIEAIVAAREGRGEGASGSEEGPFKSLFDFCRRVDRSRL
NKRTVEALIKAGAFDSLHLNRAEVLASVERAFNFAAAQQVNVNQGGLFDTMGADDHGSST
QEPDLVPTTPWGVKEQLTLEKTAMGFYFSGHLFDEVRREVRRFARTALEDVKESRDPVIL
AGIVNDFRVINGQRGRLALFKLDDKTAVLEISADETLINLHRNLLKDDELIVVQAVAQPD
RFSGGLRLKIQQIWDLASARCRFGKYLRVAVNGHAPSVVQLVRDFPPKREVTDQGELVRG
LPVRLALMREGAQCELQLDDRALFFPTDAALASWMAQAHEQRAEIVFD
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgttcatacacctgcgcctgcacaccgagttttctgtcgtcgatggaaccaaccgcatc
gatgaagtggtggccgcggctgcggccgatggccagccagccttggccatcaccgacctc
aacaacctgtttggcgcggtcaagttttacaaagaggcgcgcggcaaaggggtgaagccc
ctgctcggcgctgaagtgttgctgcagggcttcaccgagcagacgctcaatgccatgccc
gggagccatcaaccggctgcgcccaaagtgattttgctggtccaggacacgcagggttac
ctcaacctgtgcgaattgctcgcccgagcctggacacgaaccgacgggcgcgggcctgcg
gtgttgcagcgagcgtggctggaagagctcaatgggggcctgctgatgcttgccggtgcc
caggcggggccggtgggacaggcactcctgcaaggagatacccagcgcgcggccgatgtc
gccttgcagctgtccagcctttttacccaccgcttttatattgaagtgcagcgggcgggt
cgaccggacgatgagcgccatgtgaccgctgcggtgcagctggcggcccgcctgcatttg
cctgtggtggccacccatccggtgcagttcctcaccgaggaagactacgaagcgcatgaa
gcccgggtgtgtatctccgatggtgaaatcctgggcaaccggcgccgggtgcgccgcttc
acccgcgagcagtatttcaagagcgcagagcaaatgaccgctttgtttgccgatctcccc
tcggctgtggccaatacgctggaaatcgccaagcgctgcacgctcacgctggtgttgggc
aagccgcagctgcctgatttccccacgccgctgatcgatggtgtgcccatgcccatggcg
gacttcttccgccagtcatcgtttgaaggcctggaagatcgcctggtccacctgtacccg
gatgcgaccaaacgcgaaaccgagcgtcctcgttatgtggcgcgtctggagtttgagatc
aacacgatcctgaacatgggcttccccggctacttcctgatcgtgggcgatttcatcatc
tgggccaagaaaaacggttgcccggtcggacctggtcgaggttcgggcgccggttcactg
gtggcttatgcgctgaagatcaccgatctggatccgctgcaatacaacctgctgtttgag
cgctttctgaacccggaacgggtgtccatgcccgacttcgacatcgatttttgccaaagc
aaccgcgatcgggtgatcgattatgtgaaggacaaatacggcaagaacgccgtgagccag
atcgccaccttcggcaccatggcagcccgcgccgccatccgcgacgtgggtcgtgtgctt
gatttttcctacggcttttgtgacggcatctccaagctgatcccgaacaagccgggcaaa
cccatcaccatccagtacccgccgccagacgtcaaggacgatgacagggaaaagtacgcc
atgctggcagagcccatgctggccgagcggatccagaaagaggaagacgtcaaaaccctg
atcgagctggcccagaagctcgaaggcatgacgcgcaacatcggcatgcacgccgggggc
gttttgatcgcgcccggcaagctgaccgacttctgcccactctatgcccagccgggcagt
gattcggcggtgagccagtacgacaaggacgacgtggaggccgtcggcctggtgaagttc
gacttcttgggcttggccacgctgaccatcctggagatcgcccgcgaattcatcgccacg
cgccacaagggacaagaggatttttgcttcgaaaacgtgccgctggacgatgccagaacc
tatgcgctgttttcccgcggacaaaccgaagcggtgttccagtttgaaagccggggcatg
caagggatgttgcgcgatgccaaaccgtcgcgcctggaagacctgatcgcgctcaacgcc
ttgtaccggcccgggcctatggacctgatccccagcttcgtggcccgcaagcacgggcgc
gaggtgatcgagtacccgcacccgctggtggccaatatgctgtcggagacctacggcatc
atggtctaccaggagcaggtgatgcagaccgcccagatcctgggcggctattcgctgggt
ggcgccgacatgctgcgccgtgccatgggcaagaagaaggccgaagaaatggccgagcac
cgcaccatcttccgcgccggtgcggcgaaaaacggtatcgatgagaaaaaggccgacgaa
atcttcgacttgatggagaagttcgcgggctacggcttcaacaagtcccacgccgccgct
tactccctgctggcgtatcacacgggctggctcaaggtgcactacgcggccgagttcttc
tgcgccaacatgacggtggagatggacgacaccgacaagctcaaggtgctggtggacgac
gcccacaaaatgggtctgagcttcgaagcgcccgatgtgaaccgcagcttctaccgcttt
gagcccatcaccgacaaggccatccgctatggcctgggcgccatcaagggcaccgggcaa
ctggccattgaggctatcgtggccgctcgcgagggccgcggcgaaggcgccagcggcagc
gaggaaggcccgttcaagagcctgtttgatttctgccggcgggtggaccgcagccgcttg
aacaagcgcacggttgaagcactgatcaaggccggcgcctttgattcgctgcacctgaac
cgcgccgaggtgctggcttcggtggagcgcgcgttcaactttgccgctgcccagcaggtg
aacgtcaatcaaggcgggctgtttgacacgatgggtgccgacgaccatggctccagcacc
caggaacccgatctggtgcccaccacgccctggggtgtgaaagaacagctgacgctggag
aagaccgccatgggcttctacttctcggggcacctgtttgacgaggtgcgacgggaggtg
cggcggtttgcccgcaccgcgctggaagatgtcaaggaaagccgcgacccggtgattctg
gcgggcatcgtcaacgactttcgcgtgatcaacggccagcgcggccgcctggccctgttc
aagctggacgacaagacggcggtgctggaaatcagcgccgatgaaaccctcatcaacttg
caccgcaacctgctcaaggacgacgagctcatcgtggtgcaggccgtggcgcagcctgat
cgcttttcagggggcttgcggttgaagatccagcagatctgggacctggcttcggcgcgt
tgccggtttggcaagtacctgcgtgtcgccgtcaacgggcatgcgccttcggtggtgcaa
ctggtgcgggacttcccgcccaagcgggaagtgaccgatcagggggagctggtgcgtggc
ctgccggtccgtctggccttgatgcgcgaaggtgcccagtgtgaattgcaactcgacgac
agggccttgtttttccccacagacgcggccttggcgagctggatggcgcaggcacacgaa
cagcgggccgagatcgtctttgattga
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