Hydrogenophaga sp. PAMC20947: E5678_03665
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Entry
E5678_03665 CDS
T05960
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5678_03665 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyc03019
]
E5678_03665 (rnr)
03016 Transfer RNA biogenesis [BR:
hyc03016
]
E5678_03665 (rnr)
Enzymes [BR:
hyc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E5678_03665 (rnr)
Messenger RNA biogenesis [BR:
hyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E5678_03665 (rnr)
Transfer RNA biogenesis [BR:
hyc03016
]
Prokaryotic type
tRNA degradation factors
E5678_03665 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QCB45203
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Position
795315..797612
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AA seq
765 aa
AA seq
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MNEKNSPLAEFEGVVSGHRDGHGFVIRDDGQADIYLPSNEMRAVLHKDRVKARIVRTDRK
GRPEGRVTEIVERSDSPIIGRLLQESGVWLVAPEDKRYGQDVLIPKNATGQAKPGQVVVV
ELTEPPALYGQPVGRVKEVLGDIDDPGMEIEIAVRKYSVPHEFSDAALAQARLLPDHVRS
SDHKNRVDLRDVPLVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIADVSHYVETGAA
IDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLMPGVERLCMVCDMLVNAKGEVHAYQFY
PAVMFSHARFTYTEVAAVLQNTRGPEAAQRKPLVPYLLNLHDVYRALLVARQARGAVDFE
TTETQIVCDESGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFISQSKHVGLFRVHEGPT
PEKQEILRTYLKAMGIPQTISDNPQPSEFRHIAEMTKDRPEAQQIHMMLLRSMSQAIYTP
NNEGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILLHQRYQLPNLPTPGEAHAKLSKRL
ASRVKPPSDKPVKKPSVDTLAWQAAGLHCSANERRADEASRDVEAWLKCKYMREHLGEEF
SGVVSSVTSFGLFVTLDAMYVEGLVHITELGGEYFRFDEARQELRGERTGIRYALGTKVN
VQVSRVDLDGRRIDFRLVTGEDELLLRAKRDKTGSGPDDDGPSGGAERAGKSRRKRDGGG
GTPRPANGAAAQVLEVKSAVKRSAPKKEPRGGDRAKSSKSRKSRR
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaaaaaaatagcccattggcagaatttgaaggtgtcgtgtctggtcatcgtgac
ggacacggctttgttatccgcgacgatggacaggccgatatttacttgccgtccaacgaa
atgcgggcggtattgcacaaggatcgggtcaaggcccgtatcgtgcggacggaccgaaaa
gggcgccctgaagggcgggtgaccgagatcgtggagcgctccgactcgcccatcatcggt
cgtttgctgcaggaaagcggcgtctggctggtggcaccagaagacaagcgctatggccag
gatgtgctgatccccaagaacgcaacggggcaggccaagcctggacaggtggtggtggtg
gaactcaccgaaccgccggccttgtatggccagccagtcggacgggtgaaggaggtgctc
ggggatattgatgaccccggcatggaaatcgaaatcgcggtgcgcaaatacagcgtgccg
cacgagttttcagacgcggccttggctcaagcccggttgctgccggaccatgtacgttct
tcggaccacaaaaaccgtgtggatctgcgcgatgttcccctggtcaccattgatggtgag
gatgcccgtgacttcgatgacgccgtgtactgtgagcccgccaaagtcggtcgcggtaaa
ggttggcgtctcttggttgcgatcgccgatgtgagtcactatgtggagactggcgcggcc
atcgatgtggacgcctacgaccgagccacctcggtgtatttcccgcgtcgcgtgattccc
atgctgccagagaaactgtccaacggcctgtgttcgctgatgcccggggtcgagcgtctg
tgcatggtctgcgacatgctggtgaatgccaagggcgaggttcatgcgtaccagttttat
cccgcagtgatgttcagccatgcgaggtttacctacaccgaggtcgccgcggttttgcag
aacacgcgaggccctgaagcagcgcagcgcaagcccttggtgccctatctgctgaacttg
cacgacgtgtaccgggctttgctggtggctcgccaagcgcgtggtgcggtggacttcgaa
accaccgagacgcagatcgtctgtgacgaatcgggtcgtatcgaaaaaatcgtgccgcgt
acccgcaacgatgcacacaagctcattgaagaagcgatgctcgcggccaacgtgtgttcg
gcagacttcatcagtcagagcaaacatgtgggcctgttccgggtgcacgaaggaccgacg
cctgaaaagcaggagatcctgcgcacctatttgaaggcgatgggcattccccaaaccatc
agcgacaacccgcaaccgtctgagttccggcacattgccgaaatgaccaaagaccggcca
gaggctcagcagatccacatgatgctgttgcgctctatgtcgcaagcgatctacacgccg
aacaacgaaggccactttggcctcgcgttcgaggcctacacccacttcaccagtccgatt
cggcggtatcccgacctgttggtgcaccgggtgatcaaggccatcttgctgcaccagcgc
taccagttgcccaacctgccgacgccaggcgaggcccatgccaagctcagcaagcgcctg
gccagtcgggtgaagccgccgagcgacaagccggtgaaaaagccttcggtagataccttg
gcgtggcaggctgcaggcttgcattgcagcgccaatgagcgccgtgcggacgaagcgagt
cgagatgtcgaagcctggctcaagtgcaagtacatgcgcgagcacctgggtgaggagttc
tcgggcgtggtgagttcggtgaccagtttcggcttgttcgtgacgctggacgcaatgtac
gtagaaggtctggttcacatcaccgagctggggggtgagtacttccggtttgacgaggcg
cgccaggagttgcgcggcgagcgcacaggcatccgctacgctttgggcaccaaagtgaat
gtgcaggtcagtcgggttgatctggacggccggcgcatcgacttccgcctggtgaccggt
gaggacgaactcttgttgcgcgccaagcgcgacaaaaccggtagtggtcctgatgacgac
ggcccgtctggtggggccgagcgcgcaggcaagtcacgccgcaagcgtgacggcggcggt
ggaacaccccggccggccaatggcgcagccgcgcaggtgctggaagtcaagtctgctgtg
aagcgctcggcgcccaagaaagaaccgcgcggtggtgatcgcgcgaagagcagcaaatct
cgcaagagtcggcgttga
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