Hydrogenophaga sp. PAMC20947: E5678_08455
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Entry
E5678_08455 CDS
T05960
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5678_08455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyc03019
]
E5678_08455
Enzymes [BR:
hyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E5678_08455
Messenger RNA biogenesis [BR:
hyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E5678_08455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
QCB46045
UniProt:
A0A4P7R9R4
LinkDB
All DBs
Position
1894864..1896747
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AA seq
627 aa
AA seq
DB search
MNFEELNLAPAIVQAVREHGYETPTPIQAEAIPAVLAGRDLLGGAQTGTGKTAAFTLPML
HRLSTGERAKNKFGGVAIRALVLTPTRELAAQVEESARVYGKHLSLTSTVIFGGVGMNPQ
INAMKRGVDILVATPGRLLDLQQQGFLDLSGVQMLVLDEADRMLDMGFIHDVKKILALVP
KEKQSLLFSATFSDEIRDLANNLLKDPLSIQVTPRNTTVQRISQVIHPVGRGKKKALLVH
IINTHNWSQVLVFTRTKFGANNVAEFLTKNGIQAMALHGNKSQGARTQALAGFKSGDIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGKSGEAVNLVSLDEEGFMM
DIERFTKQQIPVEIFQEFMPEPGERAEPIAMGRQTIWGGAGKPPSRDVMAAAAKAARTEM
LQRVREKKASDGGSPARGNGGGGGQRQRSAPQGEGQAEGRGEGGGRGRNGGGGGGRNAQG
PRPQRDGQGQPRNRDNFGGNGGGNGGGQPRNADRPNRGPREDRGDGGEGGDRSERQPGPN
AHLGSLRIREPRNTGSAPGGQPDPLRTSIDSLGSRGGRGGNGGGNRGGRGGPGGRSGGGG
GGGGGGGGNGPKGGGADPLRTSYGRIR
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgaagaattgaatctggctccggccattgtccaagctgtgcgcgagcacggt
tacgaaacccctacccctatccaggccgaggcgattcccgccgtattggcgggacgcgac
ctgctcggtggcgcccagacgggtactggcaaaacggcagcgttcacgctgcccatgctg
caccgtttgagtaccggcgaacgcgccaaaaacaaattcggtggcgtggccatccgggct
ttggtgctcacgccaacccgtgaactcgccgcccaggtggaagagtcggcacgcgtttac
ggtaaacacctgtccctgacctccaccgtcatcttcggcggcgtgggcatgaacccgcaa
atcaacgccatgaagcgtggcgtcgatattctggtggccacacctggccgcctgctcgac
ttgcagcaacaagggttccttgacctctccggcgtgcaaatgctggtgctggacgaggcc
gaccgcatgctcgacatgggcttcatccacgacgtgaagaagattctcgccctggtgccc
aaggaaaagcagagcctgttgttttcggccaccttcagcgatgaaattcgcgatctggcc
aacaacctgctgaaagatccgctgagcatccaggtgaccccgcgcaacaccaccgtgcag
cgcatctcccaggtgatccaccctgtgggtcgcggcaagaaaaaagcgctgctggtgcac
atcatcaacacgcacaactggagccaggtgctggtgttcacccgcaccaaattcggcgcc
aacaatgtggccgaattcctgaccaaaaacggcatccaggccatggcgctgcacggcaac
aagagccagggcgcgcgcacgcaagcgctggcaggcttcaaaagcggtgatatccgcgcc
ttggtggccaccgacattgcggcccgtggcatcgacattgacgagttgccacacgtggtc
aactacgaaatccccaacgtctcggaagactatgtgcaccgcatcggccgcaccggtcgc
gcgggcaagagcggtgaagctgtcaacctcgtgagcctggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcaacaaattcctgtggagatcttccaggaattcatgcca
gaacccggcgaacgggctgagcccatcgccatgggtcggcagaccatctggggcggtgca
ggaaagccccccagccgcgatgtgatggccgctgcggccaaagctgctcgcaccgagatg
ctgcaacgcgttcgtgaaaagaaggccagcgacggcggttcgcctgctcgtggcaatggt
ggcggtggcggtcagcgccaacgttctgcaccccaaggtgaaggacaagccgaaggccgt
ggcgaaggtggcggccgtggccgcaacggtggtggcggtggtggacggaacgcgcaaggc
ccacgcccacaacgcgacggccagggacaaccccgcaaccgcgacaacttcggtggcaat
ggcggcggcaacggcggcggtcaaccgcgcaacgccgatcgccccaaccgtggcccgcgc
gaagaccgcggtgatggtggtgagggtggtgatcgcagcgagcgtcaaccaggcccgaac
gcccacctgggcagcctgcgcatccgcgaaccccgcaacaccggcagcgcaccaggcggt
caacccgatccattgcgcaccagcattgattcgttgggtagccgtggtggtcgtggcggc
aatggcggcggcaaccgcggtggccgcggtggtcccggcggacgcagcggtggtggtggt
ggtggtggtggtggtggtggtggcaatggccccaaaggcggcggcgccgatccgttgcgc
accagctatggccgtatccgctga
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integrated database retrieval system
