Hydrogenophaga sp. PAMC20947: E5678_09370
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Entry
E5678_09370 CDS
T05960
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E5678_09370 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hyc03019
]
E5678_09370 (pnp)
03016 Transfer RNA biogenesis [BR:
hyc03016
]
E5678_09370 (pnp)
Enzymes [BR:
hyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
E5678_09370 (pnp)
Messenger RNA biogenesis [BR:
hyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
E5678_09370 (pnp)
Transfer RNA biogenesis [BR:
hyc03016
]
Prokaryotic type
tRNA degradation factors
E5678_09370 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
DUF5813
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
QCB46211
LinkDB
All DBs
Position
complement(2090911..2093040)
Genome browser
AA seq
709 aa
AA seq
DB search
MSMFNKVTKTFQWGPHTVTMETGEIARQASGAVLVNIDDTVVLATVVAKTDAKAGQDFFP
LTVDYTEKTYAAGKIPGSFFKREGRPSELETLTCRLIDRPIRPLFPEGFYNEVQVIVHVV
SLNPEVQADIAALIATSAALSISGIPFNGPIGAARVGYVNGEYVLNPGQTQLKDSQLDLV
VAGTEAAVLMVESEAQQLSEEIMLGAVVFGHEQGNIAIAAINELVRDAGKPAWDWQPPAK
DEPLIAKIDGLAKAKLEAAYQIRNKQARTQACRTAYAEVMAALKAEGAAFDSVAIESLLF
EIEAKIVRGQILAGEPRIDGRDTRTVRAIEIRNSVLPRTHGSALFTRGETQALVVATLGT
DRDAQRIDALAGEYEDRFMLHYNMPPFATGEAGRFGSPKRREIGHGRLAKRALIAVLPSK
EDFPYTMRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKDGNRFAVL
TDILGDEDHLGDMDFKVAGTTNGISALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKTEVSDFAPKLFTMKINPEKIRDVIGKGGSVIRALTEETGCQINIDEDGTITIA
ATEASKAEEAKRRIEQITAEVEIGKVYEGPITKILDFGALVNLLPGKDGLLHISQIAHER
VEKVTDYLTEGQIVKVKVLETDEKGRVKLSMKALIDRNSAEQPQQQPQS
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttcaataaagtcaccaagacctttcagtggggcccgcacacggtcaccatg
gaaaccggcgaaatcgcccgtcaagcctccggcgctgtgctggtcaacatcgatgacacc
gtggtgctggccactgtggtcgccaagaccgatgccaaggccggtcaagatttcttcccg
ctgaccgtggattacacggaaaagacctacgccgccggcaagatccccggcagcttcttc
aagcgcgaaggccgccccagcgaactcgaaacgctgacctgccgcctgatcgatcgcccg
attcgccccctgttccccgaaggcttctacaacgaagtccaggtcatcgtgcacgtggtc
agtctgaaccctgaagtgcaggccgacatcgcggcgttgatcgccacctccgccgctctg
tccatcagcgggatcccgttcaacggccccatcggcgctgcgcgcgtgggctatgtgaat
ggcgaatatgtcctgaacccaggccagacccagctcaaagacagccagctcgacctcgtc
gtcgccggtaccgaagccgcagtgttgatggtggagtccgaagcccagcagctgagcgaa
gaaatcatgctcggcgccgtggtgttcggccatgagcaaggcaacatcgctatcgccgcg
atcaatgagctggtgcgtgacgctggcaagccggcctgggattggcagccacctgccaag
gatgagcccctgatcgccaagatcgacggcctggccaaggccaagctggaagccgcctac
cagatccgcaacaagcaagcccgtacgcaagcctgccgcacggcttacgccgaagtgatg
gcggcgttgaaggccgaaggtgccgcattcgacagcgtagcgatcgaatcgctgctgttt
gaaatcgaagccaagattgtgcgtggtcagattctggccggtgagccccgcatcgacggt
cgcgacacccgcaccgtgcgcgccatcgaaatccgcaacagcgtgctgccccgtacccac
ggttcggccctgttcacccgcggtgaaacacaggcgcttgtggttgccacgctgggtacc
gaccgcgatgcccagcgcatcgatgcattggccggcgagtacgaagaccgcttcatgctg
cactacaacatgcctcccttcgccacaggcgaagcgggccgttttggctcacccaagcgc
cgcgaaatcggccacggccgcctggccaagcgggcgctgatcgccgtgctgccaagcaag
gaagacttcccgtacaccatgcgcgtggtgtcggaaatcaccgaatccaacggttcgtcg
tcgatggcttctgtctgcggtggctgcctggctttgatggacgcaggtgtgcccatgaaa
gcccacgtggccggtatcgccatgggcctgatcaaggatggcaaccgcttcgccgtgttg
accgacatcctgggtgacgaagatcacctgggtgacatggacttcaaggtcgccggtacc
accaacggtatctccgccttgcagatggacatcaagatccagggcatcaccaaagagatc
atgcaggttgcactggcgcaagccaaagaagcccgcatgcacatcctgggcaagatgcag
gaagccatgggcgaagccaagaccgaagtgtccgactttgcacccaagttgttcacgatg
aagatcaaccccgagaagatccgtgacgtgatcggcaagggcggctccgtgatccgtgcg
ctgaccgaagaaactggctgccagatcaacatcgacgaagacggcaccatcaccatcgca
gcgaccgaagcctccaaggccgaagaagccaagcgccgcatcgagcagatcaccgccgaa
gtggaaattggcaaggtttacgaaggcccgatcacgaagatcctggacttcggtgccctg
gtcaacttgctgcccggtaaagacggcctgctgcacatcagccagatcgctcatgagcgg
gtggaaaaagtgaccgactacctgaccgaaggccagattgtcaaagtcaaagtgctcgag
accgacgaaaagggccgcgtcaagctgtccatgaaggctttgatcgaccgcaacagcgcc
gagcaaccacagcagcaaccacagtcgtga
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