KEGG   Hydrogenophaga sp. PAMC20947: E5678_13555
Entry
E5678_13555       CDS       T05960                                 
Name
(GenBank) HsdR family type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
hyc  Hydrogenophaga sp. PAMC20947
Brite
KEGG Orthology (KO) [BR:hyc00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:hyc02048]
    E5678_13555
Enzymes [BR:hyc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     E5678_13555
Prokaryotic defense system [BR:hyc02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   E5678_13555
SSDB
Motif
Pfam: SWI2_SNF2 T1R_D3-like HSDR_N ResIII DEAD DUF3158 Cyclase RapH_N
Other DBs
NCBI-ProteinID: QCB46956
UniProt: A0A4P7RAG3
LinkDB
Position
complement(2993271..2996441)
AA seq 1056 aa
MSSVGQIEKQTQARVVALFQERLSYAYLGNRIDRDNRNIETDLLTVWLAKQGNADQLIAR
VLHELNRVASDTSKSLYDRNREVYALLRYGVKVLPAMGENKVTVWLIDWEHPENNHFAIA
EEVTVKGADAKASTKRPDVVIYVNGIALGVLELKRSTVAVAEGIRQNLDNQKKAFIQPFF
STMQWVMAGNNTEGLRYAAIETPEKYWLRWVEESGPYAAEANLLDRHLLQVCEKTRFLEL
IHDFVVFDAGTKKQCRQNQYFGVAAAQDFIRRREGGIIWHTQGSGKSLTMVWLAKWIREN
REGARVLIITDRTELDEQIEKVFKGVNEQIYRTKSGEDLIAQLNGTQESLICSLVHKFGG
KGDDDTEGKEGAKAFMESLKKLPADFKAKGDIHVFVDECHRTQTGDLHKAMKALLPNAVF
IGFTGTPLLKADKQKSIEVFGRYIHTYKFDQAVREGVVLDLRYEARDIDQAITSQKKIDD
WFDAKTKGLNDLAKAQLKQKWGTMQRVLSSQSRLEQIKNDILLDMNTKPRLMDGHGNAML
VAGSIFEACKFYELFAKGELNGKCAIVTSYAPSVADTKGETTGDGETDNLLKYSVYSQML
ADWFNESKEKAIGKAEQFEKEVKKKFIDEPGQMKLLIVVDKLLTGFDAPSATYLYIDKQM
RDHGLFQAICRVNRLDGDSKDYGYIVDYKDLFKSLEGAVEDYTSGALDGFDKEDVAGLLE
NRLENAREDLEDAREAVKALCEPVAPPRDSAAYLRYFCTKDSGNADQLKENEPKRLKLYK
FVAALLRAYANIASELDEAGYKPDEIAKIKTEVDHFTKVRDEVKLASGDYIDLKAYEPAM
RHLIDTYIRAEESEKISTFDDMSLIQLIVERGPDAVNALPKGIRKSEEAVAETIENNVRK
LIINESPVDPAYYEKMSKLLDALIEQRRKGVVSYKEYLEKVALLTKDATTPGGSTGGYPP
SLKSGAQRALFNNLDKDEALTLAVDKAIQDSRQDGWSDHPLKSKRVRIAIQDVLTSKAAA
QPVPPDTAKQEVTNGDYSIEALTTRILELAKHQNDY
NT seq 3171 nt   +upstreamnt  +downstreamnt
atgagcagtgttggccaaatcgaaaaacagactcaagcccgcgttgtcgccctgtttcag
gaacggctgagctacgcctacctgggcaaccggatcgaccgggataaccgcaacatcgag
accgatttgctcacggtttggttggccaagcaaggcaatgccgatcaattgattgcccgt
gttctgcacgagctcaaccgggtggcttcggacacgagcaagagcctctacgaccgcaat
cgagaggtgtacgccttgctgcgctatggcgtcaaagttttgccggcgatgggtgaaaac
aaggtgacggtgtggctgatcgattgggaacaccccgagaacaaccacttcgccattgcc
gaagaggtgacggtgaaaggcgcggacgccaaggccagcaccaagcggcctgacgtggtg
atctacgtgaacggcattgcgctgggggtgctggagttgaagcgatccaccgtggcggtg
gccgaaggcattcggcagaacctggacaaccagaagaaggcgttcatccagccgttcttc
tcgaccatgcagtgggtgatggcgggcaacaacaccgagggcctgcgctacgcggccatc
gagacgcctgagaagtattggctgcgctgggtggaggaaagcgggccatacgcggctgag
gcgaacctgctggaccggcacctgttgcaggtctgcgagaaaacgaggtttctggagctg
atccacgactttgtggtgttcgacgcgggcaccaagaagcagtgtcgccagaaccagtac
ttcggcgtggcggcggcgcaagacttcattcgccgccgcgagggcggcatcatctggcac
acccagggcagcggcaagagcctgaccatggtctggctggcgaagtggattcgtgaaaac
cgcgagggcgctcgggtgctcatcatcaccgaccgcaccgagctggacgaacagatcgag
aaagtgttcaaaggcgttaacgaacagatctaccgcaccaagagcggcgaagacctgatc
gcgcagctgaacggcacccaggagtctttgatttgctcgctggtgcacaaatttggcgga
aagggggacgacgacactgaaggcaaagaaggcgcaaaagcgttcatggagtcgctcaag
aagctgcccgccgatttcaaggccaagggcgacattcatgtgttcgtggacgaatgccac
cgcacccagaccggcgacctgcacaaagccatgaaggcgttgctgcccaacgcggtgttt
atcggttttaccggcacgcctttgctgaaggccgacaagcagaagagcatcgaggtcttt
ggccgctacatccacacctacaagtttgaccaggcggtgcgcgaaggcgtggtgctcgat
ctgcgctacgaggcgcgggacatcgaccaagcgatcacatcgcaaaagaagattgacgac
tggttcgacgccaagaccaagggcctgaacgatctggccaaggcccagctcaagcagaaa
tggggaaccatgcagcgggtgctctccagccagtcgcggctggagcagatcaagaacgac
atcttgctcgacatgaacaccaagccgcggctgatggatggccacggcaacgccatgttg
gtggcgggcagcatttttgaggcgtgcaagttctacgagctgtttgccaagggcgagctg
aacgggaaatgcgcgattgtgacgagctacgcgcccagcgtggccgacaccaagggcgag
acgaccggcgatggcgaaaccgacaacctgctcaagtacagcgtgtattcacagatgctg
gcggactggttcaatgagtcgaaggaaaaggccattggcaaggctgagcagttcgagaaa
gaagtgaagaagaagttcatcgatgagccggggcagatgaagctgctgatcgtggtggac
aagctgctcaccggttttgacgcgccatcggccacctacctctacatcgacaagcaaatg
cgcgaccacggcctgtttcaggcgatctgccgggtgaaccgcctggacggcgacagcaag
gactacggctacattgttgactacaaggacttgttcaagagccttgagggcgcggttgag
gactacaccagcggagcgctggatggcttcgacaaagaagacgtggccgggctgctggag
aaccggttggagaacgcgcgagaagacttggaagacgcccgagaggccgtcaaggcgctg
tgcgaaccggttgcacctccgcgcgattcagcggcctacctgcgttatttctgcaccaaa
gattcgggcaatgcagatcagctcaaagaaaacgagcccaagcggctgaagctctacaag
tttgtcgcggcgctgctgcgcgcctacgccaacatcgccagcgagttggatgaggctggg
tacaagccagacgagatcgcgaagatcaagaccgaggtggaccacttcaccaaggttcgc
gatgaggtgaagctggccagcggggactacatcgacctcaaggcgtatgagccggccatg
cgccacctgatcgacacctacatccgcgccgaggagagcgagaagatttccaccttcgac
gacatgagcctgattcagttgatcgtcgagcgcgggccggatgcggtgaacgcgttgccc
aagggcatccgaaaaagcgaagaggcggtggcggagaccattgagaacaacgtccgcaaa
ctcatcatcaacgaatcgccagttgacccggcctactacgaaaagatgtccaagctgctg
gacgcgctgatcgaacaacggcgcaaaggcgtggtgagctacaaggagtacttggagaag
gtcgccctgttgaccaaggacgcgaccactccgggaggtagcactggcggctatccgccc
agcttgaaatcgggcgctcagcgcgcacttttcaacaacctggacaaggacgaggctctc
actttggcggtagataaggcgattcaggatagtcggcaggacggttggagtgatcaccct
ttgaaatctaagcgggtgcggatcgctattcaagatgtactgacgtcaaaggctgccgcc
caaccagtgccacccgacactgcgaaacaggaggtgacgaatggtgactattcaattgag
gccctgaccacgcgaattctggaactggccaaacatcagaatgactactga

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