Hydrogenophaga sp. PAMC20947: E5678_14380
Help
Entry
E5678_14380 CDS
T05960
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5678_14380 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyc03021
]
E5678_14380 (rpoA)
03400 DNA repair and recombination proteins [BR:
hyc03400
]
E5678_14380 (rpoA)
Enzymes [BR:
hyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5678_14380 (rpoA)
Transcription machinery [BR:
hyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5678_14380 (rpoA)
DNA repair and recombination proteins [BR:
hyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5678_14380 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QCB47103
LinkDB
All DBs
Position
complement(3167794..3168780)
Genome browser
AA seq
328 aa
AA seq
DB search
MLNNLLKPKNINVEQVSTNRAKVTLEPFERGYGHTLGNALRRVLLSSMAGHAPTEVTIAG
VVHEYSSIDGVQEDVVNMLLNLKGVVFKLHNRDEVTLSLRKDGEGVVTAADIQTPHDVEI
VNPEHVIATLSAGAKLDMQIKVEKGRGYVPGSLRRSDDQSRSLGRIVLDASFSPIKRVSY
TVESARVEQRTDLDKLVLEIETNGSIGPEEAVRASAKILVEQLAVFAQLEGVELSAFDQP
AQRSSQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLN
EIKEVLASRGLTLGMKLENWPPAGLDKH
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacaatctgctcaagcccaaaaacatcaacgtcgaacaagtatcgacgaatcgc
gccaaggtcacactcgagcccttcgagcgcggctacgggcacacgctgggcaatgccctg
cgtcgggtcttgctgtcttccatggccggccatgcgccgaccgaagtgacgatcgcgggg
gtcgtgcacgagtactcctccatcgatggtgtccaggaagacgtcgtcaacatgttgctc
aacctcaagggcgtggtgttcaaactccacaaccgcgacgaagtcacgctgagcttgcgc
aaagacggcgaaggcgtggtgacggctgctgatatccagacgcctcacgacgtcgagatc
gtcaaccctgagcacgtgattgccacgctgtctgccggcgccaagctggacatgcagatc
aaggtcgaaaaaggccgtggttatgtgccaggcagcttgcgccgcagcgacgatcagtcg
cgttcgctgggtcgtatcgtcctcgacgcgtctttctcgccgatcaagcgcgtgagctat
accgtcgaaagcgcccgtgtggaacagcgcaccgacctggacaagctggttttggaaatc
gaaaccaacggttcgatcggtcctgaagaggccgttcgcgcgtctgccaagattttggtc
gagcagctggctgtgttcgcacagctggaaggtgtggagttgtcggcattcgaccaacca
gcccagcgcagctcgcaacagttcgatccgatcttgttgcgccctgtggatgagcttgag
ttgactgtccgttcggccaactgcctcaaagcagaaaacatctactacatcggtgatctg
atccagcgcaccgaaaacgagttgctcaagacccccaacctgggtcgcaagtcgctcaac
gaaatcaaggaagtgctcgcttctcgcggcctgaccttgggtatgaagcttgaaaactgg
ccaccagctggcctggacaagcactga
DBGET
integrated database retrieval system
