Hydrogenophaga sp. PAMC20947: E5678_15560
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Entry
E5678_15560 CDS
T05960
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5678_15560 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyc03021
]
E5678_15560 (rpoC)
03400 DNA repair and recombination proteins [BR:
hyc03400
]
E5678_15560 (rpoC)
Enzymes [BR:
hyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5678_15560 (rpoC)
Transcription machinery [BR:
hyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5678_15560 (rpoC)
DNA repair and recombination proteins [BR:
hyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5678_15560 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QCB47315
UniProt:
A0A4P7RD08
LinkDB
All DBs
Position
complement(3410541..3414773)
Genome browser
AA seq
1410 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLILDMTLRDIERVLYFEAYVIVDPGMTPLKKFAIMTEDDYDAKKKEFGDEFIAKM
GAEGIKELLMAIDLDIEIEKLRNDLTGSELKIKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVEAGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQIEART
LMLASNNILFPASGEPSIVPSQDVVLGLYAATREKINAKGEDMIFADVQEVQRALDNSAV
EISTRISVRLVQWAKNKETGEFTSSTSMVNTTVGRALLSEILPKGLPFEVMNKAMKKKEI
SRLINASFRKCGLKETVIFADKLLQYGFRLATRSGISIAVDDMLVPPEKPVVIGRAEAEV
KEIAQQYASGLVTAGERYNKVVDIWGKAGDEISKVMMAQLSKQKTIDAKGNEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVNSLDCGTTNGTVMRAIVEGGEVIESLRDRVLG
RVTAEEVNHPETRATMVPAGAMMDEDILDELEAAGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGMVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSAGTIGFN
ATMRYVTNSKGDLVVIARSGEIVIHDEIGRERERHKVPYGAILAVKADQSVKAGVVLANW
DPLTRPIITEFAGKVQFENVEEGLTVAKQVNDVTGLSSLVVIDPKHRGSTKVVRPLVKLL
DPQGNEVKIPGTDHSVTVGFPIGSLLEVRDGQDVGPGHVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDAGKLAEMTGTVSFGKETKGKVRLQITDPEGNIWDDLIPKEKNILVHEGQ
VVNKGEGVVDGPADPQDILRLLGIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVIVESVGDSSYIKGEQVERSEILNTIDALRAEGKIPPTYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHEARKVKEKMDDEERRA
ISEADAMSLAADQAEQSDAAEVPDTNEAAE
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattactcgacctgttcaagcagttcacgcccgacgagcacttcgatgcgatc
cgcatcggcctggcttcgccggagaaaatccgttcgtggtccttcggtgaagtgaagaag
cccgagaccatcaactaccgcaccttcaagcccgagcgcgacggcttgttttgcgccaag
atttttggccctatcaaggactacgaatgcttgtgcggcaaatacaaacgtctcaagcac
cgtggtgtgatttgcgagaagtgcggcgttgaagtcacacagaccaaggtgcgccgcgag
cgcatgggtcacattgatctggccgcgccttgcgcccacatctggttcctgaagtcgctg
ccttcgcgtctgggcctgatcctggacatgacgctgcgcgacatcgaacgcgtgttgtac
ttcgaagcctatgtgatcgtcgatccaggcatgaccccgctgaagaaattcgcgatcatg
accgaggacgactacgatgccaagaagaaggaattcggtgacgaattcatcgccaagatg
ggcgctgaaggcatcaaagagttgctgatggccatcgacctcgacatcgagatcgaaaaa
ctgcgcaacgacctgaccggctccgaactcaagatcaagaagaatgccaagcgcctgaaa
gtgctggaagccttcaagaagagcggtatcaagcccgagtggatggtgctcgacgttttg
cctgtgttgccaccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgatctgaacgacctgtaccgccgcgtcatcaaccgcaacagccgtctgcgccgtttg
ctggaattgaaggcgcctgagatcattgcgcgcaacgaaaagcgcatgttgcaagaagcc
gtggacagcctgctggacaacggtcgccgcggcaaggccatgacgggcgccaacaagcgt
gccctgaagtctttggccgacatgatcaaaggcaagagcggtcgtttccgtcagaacttg
ctgggcaagcgcgtcgactactctggccgttcggtcatcgtggtgggcccaacgctcaaa
ctgcaccagtgcggtttgcccaagctgatggccttggagctgttcaagcctttcatcttc
tcgcgcctggaagccatgggcattgcgaccaccatcaaggcggccaagaaagaagtggaa
gccggcacgccggtggtgtgggacatcctggaagaggtgatcaaagagcaccccgtgatg
ctcaaccgagcaccgacgctgcaccgcctgggtattcaggcgtttgaacccatcctgatc
gaaggcaaggccatccagctgcaccccctcgtttgcgcggccttcaacgccgacttcgac
ggtgaccagatggcggtgcacgtgccgctgtcggtggaagcacagatcgaagcccgcacc
ctgatgctggcctcgaacaacatcctgttccctgcttccggcgagccgtccatcgtgcct
tcgcaagacgtggtgctcggtttgtacgccgctacccgcgagaagatcaacgccaagggc
gaagacatgatcttcgccgatgttcaggaagtgcagcgcgccctggacaacagcgcggtc
gagatttccacccggatctctgtgcgtttggtgcaatgggcgaagaacaaagaaaccggc
gaattcacttcgtcgacttctatggtgaatacaacggttggccgtgcgctgttgtccgaa
atcctgcctaagggcttgcctttcgaggtgatgaacaaggcgatgaagaagaaagaaatt
tctcgcctgatcaacgcttcgttccgcaagtgcggcttgaaggaaacggtgatctttgcc
gacaagctgttgcaatacggcttccgtctggccacgcgctcgggtatctcgatcgctgtg
gacgacatgttggtgccgccagagaaaccggttgtgattggccgtgccgaagccgaggtg
aaagagattgcccagcaatacgcttcgggtctggtgaccgccggtgagcgctacaacaaa
gtggtggacatctggggcaaggccggcgacgagatctccaaggtcatgatggctcagctg
tccaagcaaaagaccattgacgccaagggcaacgaagtcgatcaagagtcgttcaactcc
atctacatgatggccgactctggtgcccgcggttctgctgctcagattcgccagctggcg
ggtatgcgcggtttgatggccaagcccgatggctcgatcattgagacccccatcacggcg
aacttccgtgaaggtctgaacgtgttgcagtacttcatctcgacgcacggtgcccgtaag
ggtctggccgacacggcgctgaagaccgccaactcgggttacctgacccgccgtctggtg
gacgtgacgcaagatttggtggtcaacagcctggattgcggtaccacgaacggtaccgtg
atgcgcgccattgtcgaaggcggtgaagtcatcgaatccttgcgcgatcgcgtgctgggt
cgtgtaaccgctgaagaagtgaatcaccccgagacgcgtgccaccatggtgccagctggc
gccatgatggacgaagacatcctcgacgagctggaagcggctggtgtggacgaagtgaaa
gttcgcacggcattgacctgcgaaacccgctttggtatttgcgccaagtgctacggccgc
gatctgggtcgtggtggcatggtgaacattggtgaagcggtcggcgtgatcgctgcccag
tccatcggtgagccaggcacgcagctgacgatgcgcacgttccacatcggtggtgctgca
tcgcgcgccgctgtggcctccagcgtggaagcgaagtcggccggtacgatcggtttcaac
gcgaccatgcgttatgtgaccaacagcaagggcgacctggttgtgatcgcccgttcgggc
gagatcgtcattcacgacgaaatcggccgcgagcgcgagcgccacaaagtgccttacggc
gcgatcctggcggtcaaggccgaccagagcgtcaaggctggtgtggtgctggccaactgg
gatccactgacccgacccatcatcacggaattcgccggtaaggtgcagttcgagaacgtg
gaagagggtctgacggtggccaagcaggtcaacgatgtgaccggtttgagctcgctggtg
gtgatcgatcccaagcaccgtggctcgaccaaggtggtgcgtccgctggtcaagctgctc
gacccgcaaggcaacgaagtgaagatccccggtaccgatcactcggtgacggtgggcttc
ccgatcggctccctgctggaagtgcgcgatggccaggacgtgggaccaggccatgtgctg
gcccgtatcccggtcgaaggccagaaaacccgcgacatcaccggcggtctgccgcgtgtg
gccgagttgttcgaagcgcgttcgcccaaggatgccggcaagctggccgagatgaccggt
acggtctctttcggcaaggaaaccaaaggcaaggtgcgtctgcagatcaccgatcctgaa
ggcaacatctgggacgacctcattcccaaagagaagaacatcctggtgcacgaaggccag
gtggtcaacaagggtgagggtgtggtcgatggcccagccgatcctcaagacattcttcgc
ttgctgggcatcgaagccttgtcgcgttacatcgtcgacgaagtgcaggacgtctaccgc
ttgcagggtgtgaagatcaacgacaagcacatcgaggtgattgttcgccagatgctgcgc
cgcgtgatcgttgagtccgtgggtgattcgtcctacatcaagggcgagcaggttgagcgt
tcggaaatcctgaataccatcgatgctttgcgcgccgaaggcaagattccgccgacctac
agcaacgtgttgctgggtatcaccaaggcttcgctgtcgaccgactcgttcatctcagcg
gcttccttccaggaaaccacccgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgtggtctgaaagaaaacgtgattgtgggccgtctgattcctgccggtaccggt
atggcgtatcacgaagcccgcaaggtcaaggagaagatggacgacgaagagcgccgtgcc
atttccgaagccgacgccatgtcgctggctgcggaccaggccgagcaatcggacgctgcc
gaagtacccgatacgaacgaagccgccgaataa
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