Hydrogenophaga sp. PAMC20947: E5678_15565
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Entry
E5678_15565 CDS
T05960
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E5678_15565 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hyc03021
]
E5678_15565 (rpoB)
03400 DNA repair and recombination proteins [BR:
hyc03400
]
E5678_15565 (rpoB)
Enzymes [BR:
hyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E5678_15565 (rpoB)
Transcription machinery [BR:
hyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E5678_15565 (rpoB)
DNA repair and recombination proteins [BR:
hyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E5678_15565 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DUF5887
Motif
Other DBs
NCBI-ProteinID:
QCB47316
LinkDB
All DBs
Position
complement(3414801..3418925)
Genome browser
AA seq
1374 aa
AA seq
DB search
MASASKYSYTERKRIRKSFGTRETVIEIPYLLQMQKDAYTAFLQAGIPPKKRTNEGLQAA
FEAAFPIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFSSAVRARVQLIIYDRESSTS
QSKVVKEVKEQEVYMGEVPLMTEKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGK
LLFSARIIPYRGSWLDYEFDPKDILFFRVDRRRKMPVTILLKAIGLTPETILANFFVNDH
FRLMDSGAQMAFVPERLRGEVARFDITDKSGKVVVAKDKRITVRHTREMEQSGTTHISVP
EDFLMGRVVAKNIVDEDTGEIIAKANEELTETLLKKLRTSNVQDLQCIYTNELDQGAYIS
QTLRADETVDEFAARVAIYRMMRPGEPPTEDAVQALFHRLFYNPDTYDLSRVGRMKFNAR
VGRDESTGAMVLSNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGL
ARIEKAVKERLGQAEQDPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKR
RVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIE
TPYRRVVDAKVTNQIDYLSAIEEGKYVIAQANAALDGEGRLTGDLVSAREKGESILTQSD
TIQYMDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVA
AIDSGTVVTATRGGVVDYVDAARVVIRVNDAEALAGEVGVDIYNLIKYQRSNQNTNIHQR
PIVKKGDQLSKGDVIADGASTDLGEISIGQNMLIAFMPWNGYNFEDSILISERVVAEDRY
TSIHIEELVVMARDTKLGAEEITRDIPNLAEQQLNRLDDSGIIYVGAEVLPGDVLVGKVT
PKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGITRDKRAQQI
IDDELKRYRLDLNDQLRIVEADAFDRIEKLLTGKVANGGPKKLAKGTKIDKSYLADVEKF
HWFDIRPAEDEVAAQLESIKNSMEQTRHSFDLSFEEKRKKLTQGDELPAGVLKMVKVYLA
VKRRLQPGDKMAGRHGNKGVVSRILPVEDMPYMADGTPADIALNPLGVPSRMNVGQVLEV
HLGWAAKGLGQRIGDMLQAETKAGEMRTFLEAIYNGAGKKENFAELSDGDVMHMAENLQN
GVPFATPVFDGASEDEIRAMLKLAYPDELAARKGLTATRTQAQLYDGRTGDAFERVTTIG
YMHFLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVQGRTKVYESIVKGEHSIEAGMPESFNVLVKEIRSLGIDIELDRS
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagcatcaaagtattcctacaccgaacgcaaacgcatccgcaagagttttggt
acgcgtgaaaccgtcatcgaaattccttacctgctgcaaatgcagaaggacgcgtacacc
gccttcctgcaagccggtattccgcccaaaaagcgcaccaacgaaggcctgcaggccgcg
tttgaagccgctttccccatcgtctcgcacaacggttttgtggagatgaagtttgtcgag
tacaacctcgccaaacctgccttcgacgtgcgcgagtgccagacccgtggtctgacgttc
tcctcggctgtgcgcgcgcgcgtgcagctcatcatctatgaccgcgagtcgtcgaccagc
cagtcgaaggtggtcaaggaagtgaaagagcaagaggtctacatgggcgaagtgcccctg
atgaccgaaaaaggttccttcatcatcaacggtaccgagcgcgtgatcgtgtctcagctg
caccgttcgcctggcgtgtttttcgaacacgacaagggcaagacccacagctcgggcaag
ctgttgttctcggctcgcatcatcccttaccgtggctcgtggctggactacgaattcgac
cccaaggacatcttgttcttccgggtggatcgccgccgcaagatgcctgtcacgatcctg
ctcaaggccattggtctgacgccggaaaccatcctggccaacttcttcgtcaacgaccac
ttccgcctgatggacagtggtgcgcaaatggcttttgtgcctgagcgtctgcgtggcgaa
gtggcccgtttcgacatcaccgacaagtcgggcaaggtcgtcgttgccaaggacaagcgc
atcacggtgcgccacacccgcgagatggagcagtcgggtaccacccacatcagcgtgcct
gaagatttcctgatgggccgcgtcgtggccaagaacatcgtggacgaagacacgggtgag
atcatcgccaaggccaacgaagagttgaccgaaaccctgttgaagaaactgcgcacctcc
aacgtgcaggatctgcagtgcatctacaccaacgagctggaccagggtgcttacatctcc
cagacgctgcgtgcagacgagaccgtggatgagttcgccgcacgtgtggccatctaccgc
atgatgcgccccggcgagccgccaaccgaagacgcagtgcaggcgctgttccaccgcctg
ttctacaaccccgacacgtacgatctgtcgcgcgtgggtcgcatgaagttcaacgcccgc
gtgggccgcgatgaatccaccggtgccatggtgctgtccaacgaagacatcttggctgtg
gtcaagattctggtggacttgcgcaacggccgcggcgaagtcgatgacatcgatcacctg
ggtaaccgccgcgtgcgctgcgtgggcgagctggccgaaaaccagtaccgcaccggtttg
gcacgtatcgaaaaggccgtgaaagagcgtttgggtcaggccgagcaagatccgctcatg
ccgcacgacctgatcaactccaagcccatctctgcggccctgaaggagttctttggtgcc
tcgcagctgtcgcagttcatggaccagaccaacccgctggccgagatcacccacaagcgc
cgcgtgtcggctcttggcccaggtggtctgacccgcgaacgtgccggctttgaagtgcgt
gacgtgcacgtgacccactacggtcgtgtgtgccctatcgagacgcctgaaggtccaaac
attggtctgatcaactcgttggccttgtacgcccgtctgaacgagtacggtttcattgaa
accccctaccgccgcgtggtggatgccaaggtcacgaaccagatcgactacctgtcggcc
attgaagaaggcaaatacgtcattgcccaggccaatgccgcgctggatggggaaggtcgc
ctgaccggtgatctggtgtctgctcgcgaaaaaggcgaatccatcctgacgcagtcggac
accatccagtacatggacgtgtcgcctgcccagatcgtttcggtggctgcttcgctggtg
cccttcctggagcacgacgatgcaaaccgcgccttgatgggtgccaacatgtcgcgtcag
gctgtgcctgtgctgcgtcctgaaaagcctctggtcggcaccggtatcgagcgcgtggcc
gcgatcgactcgggcaccgtggtgaccgcaacccgtggtggtgtggttgattacgtggac
gcggcccgggtcgtgatccgtgtgaacgacgctgaagcattggccggtgaagtgggtgtg
gatatctacaacctcatcaagtaccagcgctccaaccagaacaccaacatccaccagcgc
cccatcgtcaagaaaggcgaccagctgtccaagggtgatgtgatcgccgacggcgcttcg
accgacctgggagaaatctcgatcggtcagaacatgctgatcgctttcatgccctggaac
ggctacaacttcgaagattcgatcctgatctccgaacgcgtggtggctgaagatcgctac
acctcgattcacatcgaggaactcgtggtcatggcccgcgacaccaagctgggtgcagaa
gaaatcacccgcgacatccccaacctggctgagcagcaactcaaccgcctggacgactcc
ggcatcatctatgtgggcgctgaagtgttgcctggcgatgtgctggtcggcaaggtcacg
cccaagggtgagaccacgttgacgccagaagagaaactgttgcgcgccatctttggtgaa
aaagccagcgacgtgaaagacacgtctttgcgcgtggaccagggcagctccggcaccgtg
atcgacgtacaggtgttcacccgcgaaggcatcacccgcgacaagcgtgcccagcagatc
atcgacgacgagctgaagcgctaccgcctcgatttgaacgaccagctccgcattgtggaa
gccgacgcgttcgaccgtatcgagaagttgctgaccggtaaagtcgccaacggtggcccc
aagaagctggccaaaggcaccaagatcgacaagtcgtatctggccgatgtggagaaattc
cactggtttgatatccgtccggccgaagacgaagtggctgcacagctggagtccatcaag
aactccatggagcagacgcgccacagcttcgacctgtccttcgaagagaagcgcaagaag
ctgacgcagggcgacgagttgcctgctggtgtgctgaagatggtcaaggtctacctggct
gtcaagcgccgcttgcagcctggtgacaagatggccggtcgtcacggtaacaagggtgtg
gtttcccgcatccttcccgtcgaagacatgccttacatggccgacggtacgcctgcagac
atcgcgctcaacccattgggcgtgccttcgcgcatgaacgtgggccaggtgctggaagtg
cacctgggttgggctgccaaaggcctggggcagcgcattggtgacatgctgcaagccgag
accaaagcaggcgaaatgcggactttcctggaggcgatctacaacggcgccggcaagaaa
gaaaacttcgccgagctgtctgacggtgacgtcatgcacatggctgagaacttgcaaaac
ggtgtgccgtttgcaaccccggtgttcgatggcgcttcggaagacgaaatccgtgcgatg
ttgaagctggcctaccccgacgaactcgccgcgcgcaaaggcctcaccgccacccgcacg
caagcgcagttgtacgacggccgcaccggcgacgcattcgagcgcgtgaccacgatcggc
tacatgcacttcctgaagttgcaccacttggtcgacgacaagatgcatgcccgttctact
ggcccgtactccctggtcacgcagcagccgctgggtggtaaggcacagttcggtggacag
cgattcggtgaaatggaagtgtgggcgctggaagcctacggcgccgcctacacgctgcag
gaaatgctcaccgtcaagtccgacgacgtgcagggccgcaccaaggtgtacgagtccatc
gtcaaaggcgagcactcgatcgaagcgggcatgcccgagtcgttcaacgtgctggtcaag
gagatccgttcactcggtatcgacatcgaactggaccgttcttaa
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