Hydrogenophaga sp. PAMC20947: E5678_20175
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Entry
E5678_20175 CDS
T05960
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03030
DNA replication
hyc03430
Mismatch repair
hyc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E5678_20175
03430 Mismatch repair
E5678_20175
03440 Homologous recombination
E5678_20175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hyc03032
]
E5678_20175
03400 DNA repair and recombination proteins [BR:
hyc03400
]
E5678_20175
Enzymes [BR:
hyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E5678_20175
DNA replication proteins [BR:
hyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E5678_20175
DNA repair and recombination proteins [BR:
hyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E5678_20175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QCB48138
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All DBs
Position
4429047..4429817
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AA seq
256 aa
AA seq
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MRKAPVLHSSLLRPVDAAAQAGAGQEAWPERFASLAESAKDARLRAFYAAGTVSQETPLC
DVPLMAMDVETTGLDPVKDGIVSIGLVPMSLERIRTSASRHWILKPRVPLAAESVTIHGI
TDSQVHSAPDLDAVLAEVLATMAGHVLVVHCRDIERQFFNGALRTRIGESIEFPVIDTME
LEARLHRRSQRSWWDWALGRQPQRLSIRLADSRRRYNLPRYQPHHALTDALASAELLQAQ
VAHRYSPETPVRDLWK
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
ctgaggaaagcacccgtgttgcattcgagcttgcttcgtccagtggatgctgctgcccag
gctggcgcgggtcaggaggcctggcccgaacgttttgcatctttggccgaaagtgccaaa
gacgctcgcttgcgggcgttttacgccgcggggactgtgagccaggaaaccccgttgtgt
gatgtgccgttgatggcgatggatgtggaaaccacggggcttgatccggtcaaggacggc
attgtcagcatcggtctggtgcccatgagtctggagcgcatccgcaccagcgcctcacga
cactggatcctaaagccgcgggtgccgctggctgccgagtcggtcaccatccacggcatc
accgactcgcaggtgcattccgcgcccgatctggatgcggtgctggcggaggtgttggcc
accatggcgggccatgtcctggtggtgcattgccgcgacattgagcggcagtttttcaat
ggcgccttgcgcacgcgcatcggcgagagcatcgagtttcccgtgatcgacaccatggaa
cttgaggcgcggctgcaccggcgttctcagcgaagctggtgggactgggcgctgggccgc
cagcctcagcgcctgtcgatccgcctcgccgacagccgccgccggtacaaccttccgcgg
taccagccgcaccacgcgctcaccgatgcgctggcgtcggcggagttgttgcaggcgcag
gtggcgcaccgctattcgcccgagacacctgtgcgcgatctctggaagtag
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