Hydrogenophaga sp. PAMC20947: E5678_20445
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Entry
E5678_20445 CDS
T05960
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc00470
D-Amino acid metabolism
hyc00550
Peptidoglycan biosynthesis
hyc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
E5678_20445 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
E5678_20445 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hyc01011
]
E5678_20445 (murD)
Enzymes [BR:
hyc01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
E5678_20445 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
hyc01011
]
Precursor biosynthesis
Amino acid ligase
E5678_20445 (murD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
MurD-like_N
Mur_ligase_C
AlaDh_PNT_C
NAD_binding_2
2-Hacid_dh_C
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
QCB48183
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Position
4486229..4488064
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AA seq
611 aa
AA seq
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MNHLKDQSVLILGLGISGLAMARWCVRAGAKVSVADTRAQPPQLGVLREQCPEVAFLHGA
FDRELMDRCGWHLIARSPGLAPAALSGVREWAEEHGVPLWGELDLFAAALGELGQRAEWA
YRPKVLAITGTNGKTTVTALTGLLLERCGVPVAVAGNIGPALLDVLSQALDAEATANEQD
LAEAAQLAQEAATTAEAETVTVPSSETANEPVQGRLVHEAPATDVEVDATDDEAADEAGS
VDAEEEGAAPLLVPPPVEPPQPPHLPAVWVLELSSFQLDATAGGPWDAVPTTATVLNISE
DHLDWHGSLDAYAQAKAAVFGQQALMLVNRNDPHTLAFVPPMVTVKISGRNRQQPARPWA
SFGLDEPVRAGDWGLETVNGMTWLVRALAVDETRKKGRNQDDEEDLYFQRLMPADALRIR
GRHNAANALAALALATSTGAQLAPMLHGLREYRGEPHRVESVALIEGVEYFNDSKGTNVG
ATLAAIQGLGAERHLVLILGGDGKGQDFSPLAPALAQHARAVFLIGRDAPAIRASVHAAL
SDAGVPLDDAASLVDAVQLAAGAALSGDAVLLSPACSSLDQFDNYPHRGRVFVQAVADIA
HEHGVDMEGTL
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttgaaggaccaatccgttctgatcctgggcctgggcatctccggcctggcg
atggcgcgttggtgcgtgcgagcgggtgccaaggtgtcggtggccgatacccgggcacag
cccccgcagctgggcgttttgcgggagcaatgccctgaggtggctttccttcacggcgcc
tttgaccgggaattgatggaccggtgtggttggcacctgatcgcccgcagccccggcctg
gccccggcggcattgagcggtgtgcgtgaatgggcggaggaacacggcgtccccctctgg
ggtgagctggacctgtttgcggctgcgttgggtgaattgggccagcgcgctgagtgggct
taccgccccaaggtgctggccatcacgggaaccaacggcaaaaccaccgtgacggccctg
accggtttgttgctggagcgctgcggcgtgccggtcgcggtggcgggcaacattggcccg
gcgttgctggatgtgttgtcgcaggctttggatgccgaggccacggccaacgaacaagac
cttgccgaggcggcccagctggcgcaagaggccgcgaccacagccgaggccgagacagtg
acggtcccgtccagcgaaacggcgaatgagccggtccagggccgtttggtgcatgaagca
cctgcgaccgatgtggaggttgacgcaaccgatgacgaagcggctgatgaagccggttcg
gtggacgcggaggaagagggcgcggctcccttgctggtgccaccaccggtggagccccct
caaccgccccatttgcctgcagtctgggtgctggagctttccagcttccagctcgatgcc
accgccggtggaccctgggatgcggttccaacgaccgccacggtgctcaatatttccgag
gaccatctcgactggcatggttcgttggacgcgtatgcgcaggccaaggccgcagtgttc
gggcaacaagccctgatgctggtcaaccgcaacgacccccacacgctggcgttcgtgccg
ccaatggtcacggtgaaaatcagcggccgcaaccgccagcaacccgcacgcccttgggcc
agttttgggctggacgagcctgtgcgggctggcgactggggcctggaaacggtcaacggt
atgacctggttggtgcgcgcactggccgtggacgaaacccgcaagaagggtcgcaaccag
gacgacgaagaagatctgtatttccaacggctgatgcccgccgatgcgctgcgcatccga
gggcggcacaacgccgccaatgctttggcggcgctcgcgctggccacgtcgactggcgca
cagctggcgccgatgctccacggcctgcgcgaataccgcggcgaaccgcaccgggttgaa
tccgtggcgctgattgaaggcgtggagtacttcaatgacagcaagggaaccaacgtcggt
gcgacgctggccgccattcagggtttgggcgctgagcggcacctggtcctgatccttggg
ggtgatggcaaagggcaggatttttcgccgctggcacccgccttggcgcagcacgcccgt
gccgttttcctgattgggcgcgatgcccctgcgatccgtgccagtgtccacgccgccctg
tctgatgcaggggtaccgctggacgacgcagccagcctggtcgatgcggtccagctggcg
gcaggcgctgcgttgtcgggcgatgccgtgctcctgtcgccggcgtgttccagtctcgac
cagttcgacaactacccacaccgtggccgggtgtttgtacaagccgttgccgatatcgcg
catgagcacggtgtggatatggagggcactttgtga
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